SRR2933302.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933302.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	608412
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23821	3.915274517925353	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTC	15864	2.607443640164888	TruSeq Adapter, Index 23 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCG	13372	2.1978527708197735	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGC	9769	1.6056553782634135	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCT	3466	0.5696797564808058	Illumina PCR Primer Index 5 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTTCTGC	2677	0.43999789616246887	TruSeq Adapter, Index 23 (95% over 24bp)
GAATGATCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTC	2651	0.4357244761773272	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTGTTCT	2615	0.4298074331209772	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCT	2131	0.3502560764744943	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTATGCCGTCTT	2002	0.3290533388559069	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTGTTCTCGTA	1654	0.2718552559778571	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCTGTTCTCGT	833	0.13691380183165355	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	782	0.12853132416849108	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	683	0.11225945576352866	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	18025	44.21359	1
TACGGCT	1205	43.319504	7
ACGGCTG	1215	43.148148	8
GATACCT	1605	42.61682	5
CCGATGA	390	42.115387	18
TGATACC	1650	41.863636	4
ATACCTG	1655	41.465256	6
CGTTCAT	110	40.909092	17
CGATGAA	415	40.662647	19
AATCTGT	1850	40.62162	2
AATGATC	255	40.588234	2
TACCTGT	1710	40.526314	7
GAATCTG	1850	40.5	1
CGACCAC	1195	40.481174	12
ATACGGC	3210	39.95327	6
ATGATAC	4915	39.918617	3
GAATGAT	5090	39.651276	1
AATGATA	4870	39.640656	2
CGGCTGT	1340	39.626865	9
TTCGTTG	115	39.130436	1