SRR2933298.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933298.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	925696
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27527	2.973654417865044	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	18470	1.995255461836283	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	16266	1.7571643390486724	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC	12728	1.3749654314159292	No Hit
GAACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCT	4662	0.503621059181416	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTC	3553	0.38381931001106195	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGTATTGT	3149	0.3401764726216814	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	2967	0.320515590431416	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT	2518	0.27201154590707965	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTA	2406	0.25991254148230086	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTT	2059	0.22242723313053098	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGT	1200	0.12963219026548672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATTGCG	20	7.032574E-4	45.0	1
GGGCCGC	20	7.032574E-4	45.0	7
CCGTTAT	20	7.032574E-4	45.0	15
CTAGCGG	20	7.032574E-4	45.0	2
CGTTTTT	31680	0.0	44.588066	1
CGATGAA	565	0.0	43.805305	19
CCGATGA	590	0.0	42.71186	18
CGGCTGT	1375	0.0	41.890907	9
GATACCT	1945	0.0	41.645245	5
TGATACC	1985	0.0	41.146095	4
CCGCGTA	55	6.002665E-11	40.909092	41
TACGGCT	1420	0.0	40.721832	7
ATACCTG	2010	0.0	40.634327	6
ACCGGTG	95	0.0	40.263157	17
ACGGCTG	1435	0.0	40.139374	8
ACCGACG	45	1.927583E-8	40.000004	17
CGCTTTT	850	0.0	39.705883	1
GAATCTG	2205	0.0	39.69388	1
CGGGCTA	40	3.457244E-7	39.375	6
TACCTGT	2095	0.0	39.307877	7