SRR2933297.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933297.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	528561
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27459	5.195048442847656	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG	7132	1.3493239190935389	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	4856	0.9187208288163523	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC	4577	0.8659360036022332	No Hit
GAACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCT	1702	0.3220063530983179	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGTATTGT	1410	0.26676201989931153	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC	1230	0.23270729395471856	TruSeq Adapter, Index 22 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTC	1122	0.2122744583879628	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTA	713	0.134894553324971	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTT	679	0.12846199397988123	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT	586	0.11086705224184154	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGCGTATTGTCGTATGCCG	566	0.10708319380355341	No Hit
GAATCTTTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC	550	0.10405610705292294	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	30	2.1632677E-6	45.000004	4
AGCGGGT	40	6.8030204E-9	45.0	4
GTAGATT	25	3.8879363E-5	45.0	9
GCGATAT	25	3.8879363E-5	45.0	9
CCGGTCT	25	3.8879363E-5	45.0	18
CGCGTTG	20	7.029826E-4	45.0	1
GGCGAAT	20	7.029826E-4	45.0	8
AGGGCGA	70	0.0	45.0	6
CTAGCGG	25	3.8879363E-5	45.0	2
CGTTTTT	19475	0.0	44.468548	1
ACGGCTG	755	0.0	43.211918	8
GCGATCT	85	0.0	42.352943	9
TACGGCT	770	0.0	42.077923	7
CCGGTGT	75	0.0	42.0	18
CACCGGT	135	0.0	41.666664	16
CGGCTGT	740	0.0	41.655403	9
ACCGGTG	105	0.0	40.714287	17
TGATACC	875	0.0	40.62857	4
GACCGAT	100	0.0	40.5	9
GATACCT	880	0.0	40.397728	5