SRR2933296.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933296.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	658757
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18562	2.8177309690826813	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	17483	2.6539376431673594	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	15059	2.2859719137709353	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	13836	2.100319237594439	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	3639	0.5524039972250769	No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	3562	0.5407153168770882	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC	3223	0.48925476313724187	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	3213	0.48773675270243805	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	3189	0.4840935276589091	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	2794	0.4241321154841618	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGT	1343	0.2038688013941408	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTAT	889	0.13495112765405148	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTT	885	0.13434392348013	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATG	660	0.10018868869704611	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCTA	35	1.2108649E-7	45.000004	29
TTCGTTA	25	3.8889855E-5	45.000004	43
ACGGGAT	25	3.8889855E-5	45.000004	5
CGTTAGG	30	2.1640844E-6	45.000004	2
GCGATAT	30	2.1640844E-6	45.000004	9
TAGTGCG	25	3.8889855E-5	45.000004	1
CGTTTTT	16480	0.0	43.89411	1
GATACCT	2125	0.0	42.670593	5
TACGGCT	1985	0.0	42.39295	7
TGATACC	2155	0.0	42.38979	4
ACGGCTG	1990	0.0	42.286434	8
TACGAAT	70	0.0	41.785717	12
CGGCTGT	2055	0.0	41.49635	9
CCGATGA	565	0.0	40.61947	18
CTTGTTG	205	0.0	40.609756	1
TATGGCC	50	1.0804797E-9	40.500004	10
CTCGCGG	50	1.0804797E-9	40.500004	2
CACGTGA	50	1.0804797E-9	40.500004	43
TTACACG	150	0.0	40.5	34
TACACGC	150	0.0	40.5	35