SRR2933295.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933295.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	453309
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29795	6.572779274181628	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	8972	1.979223884811464	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	6613	1.4588283047545936	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	4162	0.9181375176755812	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	1924	0.4244345468543532	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	1804	0.39796253769503803	No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	1445	0.31876711029342014	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	1192	0.2629552909825307	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC	1002	0.22104127648028166	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGATGGGTTCGTATGCCG	735	0.1621410561008054	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	714	0.15750845449792525	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	660	0.1455960503762334	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGT	586	0.12927164472798908	No Hit
GAATCTTTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	489	0.10787343732420931	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	489	0.10787343732420931	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	486	0.10721163709522642	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCAA	20	7.0287596E-4	45.000004	44
CGCATGT	20	7.0287596E-4	45.000004	38
GAGTAGA	20	7.0287596E-4	45.000004	9
CGCGCAT	20	7.0287596E-4	45.000004	36
ATCCGTC	20	7.0287596E-4	45.000004	6
TACGCGC	20	7.0287596E-4	45.000004	34
GTACTAT	20	7.0287596E-4	45.000004	40
GCGATCG	20	7.0287596E-4	45.000004	9
TTACACG	40	6.7993824E-9	45.000004	34
TGGCTAA	20	7.0287596E-4	45.000004	43
GACTAGT	20	7.0287596E-4	45.000004	3
GCGAGAC	25	3.887055E-5	45.0	21
ACCGCTC	25	3.887055E-5	45.0	30
CGAGACA	25	3.887055E-5	45.0	22
ACGAGTG	25	3.887055E-5	45.0	30
TGCGTTA	25	3.887055E-5	45.0	30
CGACCAA	30	2.162582E-6	44.999996	29
GTCAAGC	30	2.162582E-6	44.999996	16
CGTTTTT	13265	0.0	44.03317	1
TGATACC	1100	0.0	42.545456	4