SRR2933292.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933292.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	563646
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19831	3.518343073489389	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	14447	2.563133598038485	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	14438	2.561536851144158	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	7343	1.302768049449477	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	3416	0.6060541545580027	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC	2389	0.42384759228309965	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	2126	0.37718709970442443	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT	1957	0.34720374135538973	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTCCTTT	1932	0.3427683333155917	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCT	1787	0.3170429666847631	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTA	1331	0.23614112403884707	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGT	831	0.1474329632428865	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	688	0.12206242925524176	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	642	0.11390127846201338	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	629	0.11159486628131841	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTATTG	25	3.888266E-5	45.000004	1
CCGATGA	365	0.0	44.999996	18
CGTTTTT	17915	0.0	44.334354	1
TACGGCT	895	0.0	43.49162	7
TGATACC	1725	0.0	42.52174	4
GATACCT	1745	0.0	42.163326	5
CGATGAA	390	0.0	42.115383	19
ACGGCTG	925	0.0	41.837837	8
TACCTGT	1780	0.0	41.71348	7
ATACCTG	1780	0.0	41.71348	6
CGACCAC	1080	0.0	41.250004	12
ATGATCT	345	0.0	41.086956	3
ATGATAC	4350	0.0	41.01724	3
GCGACCA	1110	0.0	40.743244	11
GAATCTG	1730	0.0	40.70809	1
AATGATA	4300	0.0	40.604652	2
GAATGAT	4610	0.0	40.55857	1
CGGCTGT	960	0.0	40.54688	9
AATGATC	390	0.0	40.384617	2
ATACGGC	2620	0.0	40.276722	6