SRR2933291.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933291.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	411654
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29710	7.217226117078907	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCG	6241	1.5160790372497293	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTC	3926	0.9537135555587946	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGC	2397	0.5822851229430541	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCT	1359	0.33013161538573654	No Hit
GCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTTCTGC	890	0.21620098432178478	TruSeq Adapter, Index 19 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCTCCTTT	822	0.19968225742978324	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTC	695	0.16883110573442744	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCTCCTTTCGTATGCCGTCTT	655	0.15911420756266184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	591	0.14356717048783688	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTGCTCCTTTCGTATGCCG	552	0.1340931947703654	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	456	0.11077263915812793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACTC	20	7.028004E-4	45.000004	9
GTATGGC	40	6.7975634E-9	45.000004	9
CGAGAGT	20	7.028004E-4	45.000004	9
GGCGCGA	20	7.028004E-4	45.000004	8
GATACGC	25	3.886428E-5	45.0	5
CCCCGTC	25	3.886428E-5	45.0	17
CGTACGG	25	3.886428E-5	45.0	2
ATACGCT	25	3.886428E-5	45.0	6
GGTATAT	30	2.1620945E-6	44.999996	8
CGATGAA	60	0.0	44.999996	19
CGTTTTT	14770	0.0	44.664864	1
GACGTGT	90	0.0	42.5	7
TGACGTG	90	0.0	42.5	6
AATGATA	1755	0.0	42.179485	2
CACCGGT	70	0.0	41.785713	16
GAATGAT	1830	0.0	41.68033	1
TACGGCG	605	0.0	41.652893	7
ATGATAC	1800	0.0	41.625	3
TACGGCT	320	0.0	41.48438	7
ATACGGC	940	0.0	41.409576	6