SRR2933288.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933288.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	645361
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22303	3.4558952276322863	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCG	14726	2.281823661485587	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTC	14575	2.258425904261336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGC	11754	1.8213062146612515	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	3351	0.5192442679368602	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTC	2784	0.43138646431996974	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGC	2569	0.3980717768814664	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAGTACCGT	2504	0.38799989463261647	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCT	2326	0.3604184324742276	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAGTACCGTCGTA	1995	0.30912930902239216	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTT	1607	0.24900791959848828	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGT	905	0.1402315913109097	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGCG	35	1.2108285E-7	45.000004	1
TCGCCTG	25	3.8888975E-5	45.0	1
CTCGTAA	20	7.030984E-4	45.0	33
ATCCGGC	20	7.030984E-4	45.0	6
CGAATAG	20	7.030984E-4	45.0	26
AACGACG	20	7.030984E-4	45.0	11
TCGTAAC	20	7.030984E-4	45.0	34
CGTTTTT	20465	0.0	44.54923	1
CCGATGA	370	0.0	43.175674	18
TACGGCT	1495	0.0	43.04348	7
CGATGAA	385	0.0	42.66234	19
TGATACC	1735	0.0	42.536022	4
CGGCTGT	1520	0.0	42.48355	9
ACGGCTG	1510	0.0	42.46689	8
GATACCT	1760	0.0	42.1875	5
ATACCTG	1785	0.0	41.596638	6
GCCGATT	65	0.0	41.53846	9
TTCCGCG	60	3.6379788E-12	41.249996	1
ACGGGAT	60	3.6379788E-12	41.249996	5
TTACGGG	60	3.6379788E-12	41.249996	3