SRR2933285.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933285.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	225477
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13978	6.199301924364791	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	2924	1.2968063261441298	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	2105	0.9335763736434315	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	1852	0.8213698071200167	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	628	0.2785206473387529	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGTCGAT	537	0.23816176372756423	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	510	0.2261871499088599	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC	412	0.18272373678911819	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTA	315	0.13970382788488406	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT	260	0.11531109603196779	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTTGTCGATCGTATGCCG	254	0.11265007073892237	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCCG	25	3.8808008E-5	45.000004	40
ATTCCAA	25	3.8808008E-5	45.000004	21
GGGCATA	25	3.8808008E-5	45.000004	7
CACCGGT	35	1.2061173E-7	45.000004	16
CCGTTGG	25	3.8808008E-5	45.000004	2
GTTTGCG	20	7.021214E-4	45.0	1
GATACTG	20	7.021214E-4	45.0	5
TGATACT	20	7.021214E-4	45.0	4
ATCAGGA	20	7.021214E-4	45.0	16
TAGCGGG	20	7.021214E-4	45.0	3
GGCATAT	20	7.021214E-4	45.0	8
CGTTTTT	6095	0.0	44.40935	1
TACGGCT	355	0.0	41.197186	7
ATACGGC	690	0.0	41.086956	6
GGACTAA	55	6.002665E-11	40.909092	8
CGACCAC	220	0.0	40.909092	12
CGGGATT	55	6.002665E-11	40.909092	6
GAATGAT	1215	0.0	40.74074	1
ACGGCTG	360	0.0	40.625	8
ACGGCGA	360	0.0	40.625	8