SRR2933280.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933280.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	614958
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	18200	2.9595517092224184	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18181	2.956462067328175	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	14946	2.430409881650454	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	10873	1.768088227163481	No Hit
GAACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCT	3787	0.6158144133420493	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTC	3047	0.49548099219784114	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTGATGCT	2600	0.4227931013174884	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	2578	0.41921562122941725	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	2306	0.37498495832235695	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTT	1926	0.3131921204374933	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTA	1861	0.30262229290455606	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACTGATGCTCGT	937	0.15236812920557175	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGC	50	2.1827873E-11	45.0	5
TCGTTAG	20	7.030725E-4	45.0	1
CGACGAA	25	3.888683E-5	45.0	19
CTACGGC	20	7.030725E-4	45.0	6
ACTACCG	25	3.888683E-5	45.0	14
CTACCGA	20	7.030725E-4	45.0	15
CGTTTTT	17555	0.0	44.44888	1
CGCTTTT	355	0.0	43.09859	1
GATACCT	1675	0.0	42.179104	5
TGATACC	1690	0.0	42.071007	4
TACGGCT	1355	0.0	42.011066	7
ACGGCTG	1365	0.0	41.703297	8
CGACCTG	120	0.0	41.250004	12
CGGCTGT	1400	0.0	41.142857	9
AATCTGT	2125	0.0	40.55294	2
CGGTAGT	50	1.0804797E-9	40.5	12
ATACCTG	1760	0.0	40.397728	6
GCGACCT	145	0.0	40.344826	11
GAATCTG	2160	0.0	40.104164	1
CGATGAA	455	0.0	39.56044	19