SRR2933279.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933279.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	368954
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21060	5.708028643137085	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCG	5881	1.5939656434135423	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	4606	1.2483941087506845	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGC	3744	1.0147606476688151	No Hit
GAACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCT	1398	0.3789090238891569	No Hit
GCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTCTGC	1056	0.2862145416501786	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTGATGCT	993	0.26913924229036684	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTC	883	0.2393252275351399	No Hit
GAATGCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTT	621	0.16831366511814483	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCT	551	0.14934111027390948	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACTGATGCTCGTA	545	0.14771489128726073	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCACTGATGCTCGTATGCCG	494	0.13389202990074645	No Hit
GAATCTTTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTTC	474	0.12847129994525064	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACTGATGCTCGTATGCCGTCTT	382	0.1035359421499699	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGCTGA	30	2.1614796E-6	45.000004	18
GGATACC	20	7.0270535E-4	45.0	8
TGCTACG	20	7.0270535E-4	45.0	4
CGTTTTT	11230	0.0	44.479076	1
TACGGCT	545	0.0	43.348625	7
CCGATGA	125	0.0	43.199997	18
CGATGAA	110	0.0	42.954544	19
GATACCT	720	0.0	42.1875	5
ACGGCTG	565	0.0	41.81416	8
CCGGGAT	70	0.0	41.785713	5
TGATACC	735	0.0	41.632652	4
TGATCCG	65	0.0	41.53846	4
ACACGCG	55	6.002665E-11	40.909092	36
GGCACCG	105	0.0	40.714287	8
ATGATAC	2015	0.0	40.19851	3
GAATGAT	2190	0.0	40.068493	1
ACCGGTG	45	1.9221261E-8	40.0	17
GTTTTTT	12590	0.0	39.924545	2
ATACCTG	770	0.0	39.44805	6
ATACGGC	1290	0.0	39.418602	6