SRR2933273.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933273.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	483473
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35289	7.299063236209674	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCG	7273	1.5043239229491616	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC	5249	1.0856862741042417	RNA PCR Primer, Index 38 (95% over 22bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC	4673	0.9665482870811812	No Hit
GAACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCT	1885	0.38988733600428566	RNA PCR Primer, Index 27 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC	1403	0.29019200658568317	RNA PCR Primer, Index 27 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTATGT	1266	0.26185536731110115	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTC	1134	0.23455291195164985	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTA	733	0.1516113619581652	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTT	712	0.1472677895146161	RNA PCR Primer, Index 38 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCT	659	0.13630544001423037	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC	651	0.1346507457500212	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGAGCTATGTCGTATGCCG	613	0.12679094799502763	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	579	0.11975849737213867	No Hit
GAATCTTTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC	534	0.1104508421359621	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCGGG	45	3.8380676E-10	45.000004	3
CGTTGAT	20	7.0292276E-4	45.0	25
GCACGGG	40	6.8012014E-9	45.0	3
TCTAGCG	30	2.162882E-6	44.999996	1
AGGGCGA	30	2.162882E-6	44.999996	6
CTAGCGG	30	2.162882E-6	44.999996	2
CGTTTTT	18030	0.0	44.463394	1
CCGATGA	140	0.0	43.39286	18
GATACCT	1040	0.0	42.187504	5
TACGGCT	750	0.0	42.0	7
TGATACC	1040	0.0	41.971157	4
CGATGAA	140	0.0	41.785717	19
ACGGCTG	760	0.0	41.44737	8
CGACCAC	605	0.0	40.909092	12
GAATGAT	3025	0.0	40.834713	1
CGGCTGT	730	0.0	40.684933	9
ATGATAC	2870	0.0	40.53136	3
ATACCTG	1085	0.0	40.437794	6
GTTTTTT	20000	0.0	40.41	2
ACCACCG	335	0.0	40.298508	14