##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933273.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 483473 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.781356973398722 31.0 28.0 31.0 16.0 33.0 2 29.141583914717057 31.0 30.0 33.0 16.0 34.0 3 29.256202518030996 31.0 30.0 33.0 16.0 34.0 4 32.32557557505797 35.0 32.0 37.0 19.0 37.0 5 33.754236534408335 35.0 33.0 37.0 28.0 37.0 6 33.093107577879216 35.0 33.0 37.0 25.0 37.0 7 32.4558186289617 35.0 32.0 37.0 25.0 37.0 8 33.22512322301349 35.0 33.0 37.0 28.0 37.0 9 33.324864056524355 35.0 32.0 38.0 25.0 39.0 10 32.16505575285486 35.0 28.0 39.0 15.0 39.0 11 32.89137345829033 37.0 31.0 39.0 17.0 39.0 12 33.633185307142284 37.0 31.0 39.0 25.0 39.0 13 33.80085547693459 37.0 32.0 39.0 25.0 39.0 14 34.087545736783646 37.0 32.0 40.0 21.0 41.0 15 34.66934865028657 37.0 32.0 40.0 25.0 41.0 16 34.78671611444693 37.0 32.0 40.0 25.0 41.0 17 32.933892895777014 36.0 30.0 40.0 18.0 41.0 18 33.434559944402274 36.0 31.0 39.0 23.0 39.0 19 33.11720199473393 36.0 32.0 37.0 23.0 39.0 20 32.48595061151295 35.0 31.0 36.0 24.0 39.0 21 32.68627617260943 35.0 31.0 36.0 24.0 39.0 22 32.6056760149998 34.0 30.0 37.0 24.0 39.0 23 33.73072126054609 35.0 32.0 38.0 27.0 39.0 24 31.895431595973303 34.0 30.0 36.0 21.0 39.0 25 31.132538942195325 34.0 28.0 36.0 18.0 39.0 26 29.971965342428636 33.0 25.0 36.0 18.0 39.0 27 31.973950975545687 34.0 30.0 37.0 22.0 39.0 28 32.093204791167246 35.0 31.0 37.0 21.0 39.0 29 32.04597154339539 35.0 30.0 37.0 21.0 39.0 30 31.097343595195596 34.0 27.0 37.0 18.0 39.0 31 31.421365826013034 34.0 30.0 37.0 19.0 39.0 32 31.136717045212453 35.0 30.0 37.0 16.0 39.0 33 30.610046476225147 35.0 27.0 37.0 12.0 40.0 34 29.279463382650118 34.0 23.0 37.0 8.0 39.0 35 28.472011880704816 34.0 21.0 37.0 7.0 39.0 36 27.786308645984366 33.0 18.0 37.0 7.0 40.0 37 27.749210400580797 33.0 18.0 37.0 7.0 40.0 38 27.801798652665195 33.0 18.0 38.0 7.0 40.0 39 27.36834321668428 33.0 17.0 37.0 7.0 40.0 40 27.21422085618018 33.0 16.0 37.0 7.0 40.0 41 26.769852711526806 33.0 15.0 37.0 7.0 40.0 42 27.118296161316145 33.0 15.0 37.0 7.0 40.0 43 27.099881482523326 33.0 15.0 37.0 7.0 40.0 44 27.004207060166753 33.0 15.0 37.0 7.0 40.0 45 27.207364216822864 33.0 15.0 37.0 7.0 40.0 46 26.993234368827213 33.0 15.0 37.0 7.0 40.0 47 26.979289432915593 33.0 15.0 37.0 7.0 40.0 48 26.744105668775713 33.0 15.0 37.0 7.0 40.0 49 26.47118660194054 33.0 12.0 36.0 7.0 39.0 50 26.672610466354893 33.0 15.0 37.0 7.0 39.0 51 25.29634126414505 30.0 12.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 17.0 10 21.0 11 24.0 12 52.0 13 70.0 14 153.0 15 313.0 16 597.0 17 1170.0 18 1913.0 19 3294.0 20 5002.0 21 7124.0 22 10101.0 23 14278.0 24 19526.0 25 26377.0 26 31815.0 27 31296.0 28 28219.0 29 26931.0 30 28831.0 31 31800.0 32 35328.0 33 39553.0 34 43445.0 35 45578.0 36 31510.0 37 15947.0 38 3133.0 39 52.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.994442295640088 2.2443859326167126 31.72793516907873 47.033236602664466 2 48.10506481230596 9.613360001489225 29.79028818568979 12.491287000515024 3 10.788192929077734 9.62597704525382 66.52574187183153 13.060088153836928 4 10.006970399587981 2.5778068268548604 72.35419558072529 15.061027192831864 5 15.571914046906446 2.914743946404453 66.79545703689762 14.717884969791486 6 12.34608757883067 8.361790627398014 68.73786126629615 10.554260527475163 7 46.43278942153957 1.1510466975405038 49.77134193636459 2.644821944555332 8 47.40409495463035 5.932492610755927 43.40883565369731 3.2545767809164112 9 43.89469525702573 2.25472777176802 43.48701995768119 10.363557013525057 10 24.905010207395243 13.137238273905677 49.79740337102589 12.160348147673188 11 19.49457363699731 14.639700665807604 53.83816676422468 12.027558932970404 12 15.506346786687159 13.077876117177176 57.02758995848786 14.388187137647812 13 14.574133405588316 13.727343615879272 60.68653265022038 11.011990328312026 14 13.208803800832724 15.360940528219777 57.341154521555495 14.089101149392002 15 11.53776943076449 14.16811280050799 61.343032599545374 12.951085169182146 16 12.907649444746655 14.254777412595946 55.53650358965236 17.30106955300503 17 13.300432495713308 15.127008126617206 57.74717512663582 13.825384251033668 18 13.713485551416522 14.110612174826723 56.856122265359176 15.319780008397574 19 13.668808806282872 16.971578557644378 54.005911395258885 15.35370124081386 20 14.694512413309532 16.862368736206573 57.15148519152052 11.291633658963375 21 14.878803986985831 18.171852409545103 54.960876822490604 11.988466780978461 22 13.61213552773371 13.864062729459556 56.45982298908109 16.063978753725646 23 13.621029509403835 18.144549954185653 55.399163965723005 12.835256570687505 24 14.026636440918109 15.744209087167224 54.61649357875207 15.612660893162596 25 13.15854246255737 19.02939771197151 52.96676339733553 14.845296428135594 26 13.463213043954886 15.732833064100788 55.37703242993921 15.426921462005117 27 14.158184634922735 16.454279763295983 53.8596777896594 15.527857812121876 28 12.989349974041984 16.425736287238376 55.69369954475224 14.891214193967398 29 16.695658289087497 15.40478992622132 52.84224765395379 15.057304130737394 30 14.823992239483902 18.226870993830058 54.02411303216519 12.925023734520853 31 16.764534937835204 16.140301526662295 51.53690071627578 15.55826281922672 32 16.63815766340623 17.461574896633316 51.033046312824084 14.867221127136364 33 15.41657962285381 17.291141387419774 49.47018758027853 17.82209140944789 34 18.128830358675664 20.548407046515525 46.59184690768667 14.730915687122135 35 15.106531285097615 23.244524513261343 44.70384075222401 16.945103449417033 36 21.681252107149724 20.484287643777417 41.27552107356564 16.558939175507213 37 17.1339454323199 23.264174007648826 41.76696527003576 17.83491528999551 38 19.73326328460948 21.194151483123154 43.0274286257971 16.045156606470268 39 19.42031923189092 22.454201165318434 40.45706792313118 17.668411679659464 40 19.082554765209224 21.35527733710052 44.30567994489868 15.256487952791572 41 20.09874388021668 23.607109393906175 39.8022226680704 16.491924057806745 42 18.007003493473263 21.872989805014964 43.56872048697652 16.55128621453525 43 21.00923939909778 20.60487348828166 40.22065348013229 18.165233632488267 44 19.798003197696666 22.442411468685947 38.864631530612876 18.894953803004512 45 18.4328804297241 20.947188364189934 39.59642006895938 21.023511137126583 46 19.935963331975103 22.32906491158762 38.10181747481245 19.633154281624826 47 16.665253281982658 21.127550038988733 43.48536526341699 18.721831415611625 48 18.412196751421487 22.824439006935236 38.24867159076101 20.514692650882264 49 17.057415822600227 21.121551772280974 41.234360553743436 20.58667185137536 50 17.97184124035882 20.465672333305065 40.17452887751746 21.38795754881865 51 17.877109993732844 20.635278495386505 38.900827967642456 22.586783543238194 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 62.0 1 399.0 2 736.0 3 25575.5 4 50415.0 5 34303.0 6 18191.0 7 17289.0 8 16387.0 9 16129.0 10 15871.0 11 15382.0 12 14893.0 13 14171.5 14 13450.0 15 12624.5 16 11799.0 17 10989.5 18 10180.0 19 9498.0 20 8816.0 21 8196.5 22 7577.0 23 7177.0 24 6777.0 25 6548.0 26 6318.5 27 6318.0 28 6467.0 29 6616.0 30 6889.0 31 7162.0 32 7581.5 33 8001.0 34 8725.0 35 9449.0 36 10006.0 37 10563.0 38 11088.5 39 11614.0 40 12162.5 41 12711.0 42 13672.5 43 14634.0 44 16285.5 45 17937.0 46 30888.5 47 43840.0 48 36493.5 49 29147.0 50 27430.5 51 25714.0 52 22615.0 53 19516.0 54 18134.0 55 16752.0 56 15549.5 57 14347.0 58 13492.5 59 12638.0 60 11089.5 61 9541.0 62 8420.5 63 7300.0 64 6444.0 65 5588.0 66 4804.0 67 4020.0 68 3420.5 69 2821.0 70 2400.5 71 1980.0 72 1668.0 73 1356.0 74 1174.5 75 847.0 76 701.0 77 549.0 78 397.0 79 298.0 80 199.0 81 145.5 82 92.0 83 61.0 84 30.0 85 22.5 86 15.0 87 10.0 88 5.0 89 3.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 483473.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.24222703123755 #Duplication Level Percentage of deduplicated Percentage of total 1 82.64472263268114 46.48123253240908 2 8.380447288841243 9.426700380846567 3 3.6156836015927625 6.100622939817083 4 1.9652290551678613 4.421154347565412 5 1.1324963595769584 3.184705868368866 6 0.7048054890539904 2.3783898196942164 7 0.471127031653588 1.8548063432369895 8 0.2710998750154634 1.2197808575007854 9 0.16725809815609669 0.8466271136377382 >10 0.5595995978717804 5.27447087963436 >50 0.045635805085444 1.78256592903516 >100 0.03628420566478923 3.8478851445481577 >500 0.002618447831479635 0.9427213413187694 >1k 0.001870319879628311 2.179766975542015 >5k 7.481279518513243E-4 2.6344022843101165 >10k+ 3.7406397592566217E-4 7.424167242534714 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35289 7.299063236209674 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCG 7273 1.5043239229491616 No Hit GAATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC 5249 1.0856862741042417 RNA PCR Primer, Index 38 (95% over 22bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGC 4673 0.9665482870811812 No Hit GAACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCT 1885 0.38988733600428566 RNA PCR Primer, Index 27 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGC 1403 0.29019200658568317 RNA PCR Primer, Index 27 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGAGCTATGT 1266 0.26185536731110115 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTC 1134 0.23455291195164985 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTA 733 0.1516113619581652 No Hit GAATGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTT 712 0.1472677895146161 RNA PCR Primer, Index 38 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCT 659 0.13630544001423037 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC 651 0.1346507457500212 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCGAGCTATGTCGTATGCCG 613 0.12679094799502763 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 579 0.11975849737213867 No Hit GAATCTTTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTC 534 0.1104508421359621 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06515358665323606 0.0 2 0.0 0.0 0.0 0.4755177641771102 0.0 3 0.0 0.0 0.0 0.6296111675315892 0.0 4 0.0 0.0 0.0 1.2991418341872245 0.0 5 0.0 0.0 0.0 2.839869030948988 0.0 6 0.0 0.0 0.0 3.385090791005909 0.0 7 0.0 0.0 0.0 3.892461419769046 0.0 8 0.0 0.0 0.0 4.549995553009165 0.0 9 0.0 0.0 0.0 4.9084436979934765 0.0 10 0.0 0.0 0.0 7.1131169682691695 0.0 11 0.0 0.0 0.0 7.695776186053823 0.0 12 0.0 0.0 0.0 9.213337663116658 0.0 13 0.0 0.0 0.0 9.447270064719229 0.0 14 0.0 0.0 0.0 9.599295100243447 0.0 15 0.0 0.0 0.0 9.900656293112542 0.0 16 0.0 0.0 0.0 10.095910216289225 0.0 17 0.0 0.0 0.0 10.267377909417899 0.0 18 0.0 0.0 0.0 10.442775501424071 0.0 19 0.0 0.0 0.0 10.902987343657246 0.0 20 0.0 0.0 0.0 11.075282383918026 0.0 21 0.0 0.0 0.0 11.260194467943402 0.0 22 0.0 0.0 0.0 11.514810547848587 0.0 23 0.0 0.0 0.0 11.70303202040238 0.0 24 0.0 0.0 0.0 11.855884403058703 0.0 25 0.0 0.0 0.0 11.984123208534912 0.0 26 0.0 0.0 0.0 12.125185894558745 0.0 27 0.0 0.0 0.0 12.28052031861138 0.0 28 0.0 0.0 0.0 12.42282402533337 0.0 29 0.0 0.0 0.0 12.585190900008895 0.0 30 0.0 0.0 0.0 12.76948247368519 0.0 31 0.0 0.0 0.0 12.920886998860329 0.0 32 0.0 0.0 0.0 13.082840199969802 0.0 33 0.0 0.0 0.0 13.23858829758849 0.0 34 0.0 0.0 0.0 13.412331195330452 0.0 35 0.0 0.0 0.0 13.601173178233324 0.0 36 0.0 0.0 0.0 13.776777607022522 0.0 37 0.0 0.0 0.0 13.95031366798146 0.0 38 0.0 0.0 0.0 14.146188101507219 0.0 39 0.0 0.0 0.0 14.494708080906276 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGCGGG 45 3.8380676E-10 45.000004 3 CGTTGAT 20 7.0292276E-4 45.0 25 GCACGGG 40 6.8012014E-9 45.0 3 TCTAGCG 30 2.162882E-6 44.999996 1 AGGGCGA 30 2.162882E-6 44.999996 6 CTAGCGG 30 2.162882E-6 44.999996 2 CGTTTTT 18030 0.0 44.463394 1 CCGATGA 140 0.0 43.39286 18 GATACCT 1040 0.0 42.187504 5 TACGGCT 750 0.0 42.0 7 TGATACC 1040 0.0 41.971157 4 CGATGAA 140 0.0 41.785717 19 ACGGCTG 760 0.0 41.44737 8 CGACCAC 605 0.0 40.909092 12 GAATGAT 3025 0.0 40.834713 1 CGGCTGT 730 0.0 40.684933 9 ATGATAC 2870 0.0 40.53136 3 ATACCTG 1085 0.0 40.437794 6 GTTTTTT 20000 0.0 40.41 2 ACCACCG 335 0.0 40.298508 14 >>END_MODULE