SRR2933270.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933270.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	741288
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	24513	3.3068119273480754	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG	23232	3.1340045974034383	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19349	2.610186594144246	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGC	15678	2.1149674620390453	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCT	5421	0.731294719461262	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTC	4826	0.6510290197602011	No Hit
GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	4334	0.5846580546292399	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTACTCCT	4022	0.542569149912045	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT	3852	0.519636092854599	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTA	2955	0.39863049179266363	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTT	2843	0.3835216542018757	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGT	1439	0.19412158297449844	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTAT	767	0.10346855742977087	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGACG	30	2.1644537E-6	45.000004	26
CGATAGG	25	3.88946E-5	45.000004	10
ACGACGG	30	2.1644537E-6	45.000004	27
CGTTTTT	23995	0.0	44.521774	1
CGATGAA	605	0.0	42.768597	19
ACGGCTG	1990	0.0	42.738693	8
CGGCTGT	2005	0.0	42.531174	9
TACGGCT	2020	0.0	42.103962	7
GATACCT	2695	0.0	41.743973	5
CCGATGA	615	0.0	41.707317	18
ATACCTG	2710	0.0	41.512913	6
TGATACC	2715	0.0	41.436462	4
CGCTTTT	640	0.0	41.132812	1
CGGGTAT	115	0.0	41.086956	6
GAATCTG	2855	0.0	40.980732	1
TACCTGT	2795	0.0	40.73345	7
CGACCAC	1760	0.0	40.653408	12
GCGGGTA	135	0.0	40.0	5
GCGACCA	1820	0.0	39.931316	11
GAATGAT	8195	0.0	39.838318	1