SRR2933269.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933269.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	432175
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20308	4.699022386764621	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCG	10187	2.357146989066929	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	7002	1.6201770116272343	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGC	5421	1.2543529820096024	No Hit
GAACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCT	2175	0.5032683519407648	No Hit
GCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTCTGC	1967	0.4551397003528663	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTACTCCT	1688	0.3905825186556372	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTC	1529	0.35379186672065716	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT	966	0.22352056458610517	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTACTCCTCGTA	919	0.21264534042922428	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTT	916	0.21195117718516804	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCTGTACTCCTCGTATGCCG	874	0.20223289176838086	No Hit
GAATCTTTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	570	0.13189101637068318	No Hit
GAATGCTGCCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCTT	455	0.10528142534852779	No Hit
GAATGACTCTCTCTTATACACATCTGACGCTGTACTCCTCGTATGCCGTCT	446	0.10319893561635911	No Hit
GAATCTGTCTCTTATCCACATCTGACGCTGTACTCCTCGTATGCCGTCTTC	433	0.10019089489211547	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCGTA	35	1.2095734E-7	45.000004	40
CCGTACT	30	2.1623455E-6	45.000004	42
CGTACTC	30	2.1623455E-6	45.000004	43
GCGACCG	75	0.0	45.0	11
ACCGCCG	20	7.0283964E-4	45.0	14
CCGCTGG	25	3.8867518E-5	45.0	2
CCCGTAC	40	6.7975634E-9	45.0	41
GGTATTC	20	7.0283964E-4	45.0	8
GCGACTG	125	0.0	44.999996	11
CGTTTTT	14860	0.0	44.606327	1
TGATACC	1300	0.0	43.26923	4
TACGGCT	865	0.0	43.17919	7
CCGATGA	120	0.0	43.125004	18
ACGGCTG	870	0.0	42.931034	8
CTACGGC	85	0.0	42.35294	6
GCTACGG	85	0.0	42.35294	5
CACCGGT	85	0.0	42.35294	16
GATACCT	1330	0.0	42.293236	5
TGCTACG	80	0.0	42.1875	4
GAATCTG	1060	0.0	41.816036	1