SRR2933268.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933268.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	650570
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	15293	2.350707840816515	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	14141	2.1736323531672226	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13447	2.066956668767389	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	13183	2.0263768695144257	No Hit
GAACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	3872	0.5951703890434542	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTC	3041	0.4674362482131054	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATTCGTCCT	2938	0.4516039780500177	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	2798	0.43008438753708284	TruSeq Adapter, Index 22 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTA	2473	0.38012819527491276	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCT	2301	0.3536898412161643	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTT	1084	0.16662311511443811	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGT	956	0.14694806093118343	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTAT	654	0.1005272299675669	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAT	80	0.0	45.000004	14
GCGATCG	20	7.0310256E-4	45.000004	9
AGCTACG	75	0.0	45.000004	9
TATCGGG	30	2.1640426E-6	45.000004	3
CGTTTTT	11345	0.0	44.1472	1
GCTACGA	85	0.0	42.352943	10
TGATACC	1955	0.0	42.35294	4
GATACCT	1950	0.0	42.346153	5
TACGGCT	1635	0.0	41.972477	7
ACGGCTG	1635	0.0	41.697247	8
CGATGAA	375	0.0	41.399998	19
CGACCAC	1330	0.0	40.939846	12
ATACCTG	2045	0.0	40.929092	6
TCTCGCG	50	1.0804797E-9	40.5	1
TTGCCCG	50	1.0804797E-9	40.5	1
CGGCTGT	1710	0.0	40.131577	9
ATGATAC	5955	0.0	40.125946	3
AATGATA	5880	0.0	40.063774	2
GAATGAT	6235	0.0	40.056133	1
CTACGAA	90	0.0	40.000004	11