SRR2933267.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933267.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	468755
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20789	4.43493936064682	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCG	6563	1.400091732354855	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGC	5013	1.0694285927616773	No Hit
GAATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTC	3848	0.8208979104222889	No Hit
GAACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCT	1531	0.3266098494949387	No Hit
GCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCTTCTGC	1494	0.31871660035626287	TruSeq Adapter, Index 22 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATTCGTCCT	1275	0.2719970986976139	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTC	877	0.18709133769239794	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTA	828	0.17663811586009748	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATTCGTCCTCGTATGCCGTCT	547	0.11669208861772142	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCATTCGTCCTCGTATGCCG	545	0.11626542650211731	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCTACG	70	0.0	45.000004	4
CGCGCAA	25	3.887259E-5	45.0	16
TCCGTCA	20	7.029007E-4	45.0	28
TGTCGTG	20	7.029007E-4	45.0	1
CGTTTTT	9520	0.0	44.267334	1
TACGGCT	745	0.0	41.677853	7
ACCGGTG	65	0.0	41.53846	17
CGACCAC	510	0.0	41.47059	12
GAATGAT	2615	0.0	41.38623	1
TTACGGG	55	6.002665E-11	40.909092	3
ATGATAC	2480	0.0	40.64516	3
AATGATA	2490	0.0	40.391563	2
ATACGGC	1625	0.0	40.153847	6
TGATACC	910	0.0	40.054943	4
GTTTTTT	10665	0.0	40.000004	2
ACGGCTG	780	0.0	39.807693	8
GATACCT	915	0.0	39.590164	5
GCGACCA	535	0.0	39.53271	11
TCGTTGA	80	0.0	39.375	24
ATCCGGC	40	3.4523873E-7	39.375	6