##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933259.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 461926 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.216621277001078 31.0 26.0 31.0 16.0 33.0 2 28.281794053593 31.0 28.0 33.0 16.0 34.0 3 28.481414772063058 31.0 28.0 33.0 16.0 34.0 4 31.747087195784605 35.0 28.0 37.0 19.0 37.0 5 33.56310318102899 35.0 33.0 37.0 28.0 37.0 6 32.42380381273191 35.0 32.0 37.0 17.0 37.0 7 32.056106389335085 35.0 31.0 35.0 25.0 37.0 8 32.69801007087715 35.0 32.0 35.0 26.0 37.0 9 32.75218108528206 35.0 31.0 37.0 25.0 39.0 10 31.26781562414759 35.0 27.0 38.0 15.0 39.0 11 32.473253291652775 35.0 30.0 39.0 17.0 39.0 12 33.079757363733584 35.0 31.0 39.0 23.0 39.0 13 33.29617730978555 35.0 32.0 39.0 25.0 39.0 14 33.15750791252278 36.0 31.0 39.0 18.0 41.0 15 33.80437126292956 36.0 32.0 39.0 25.0 41.0 16 34.02292791486082 36.0 32.0 40.0 25.0 41.0 17 31.945311586704364 34.0 27.0 39.0 18.0 41.0 18 32.788173863346074 35.0 30.0 39.0 22.0 39.0 19 32.7248888350082 36.0 30.0 37.0 19.0 39.0 20 32.43095647354771 34.0 30.0 37.0 24.0 39.0 21 32.903400111706205 35.0 31.0 37.0 24.0 39.0 22 33.352770790126556 35.0 31.0 38.0 26.0 39.0 23 34.24768036438737 35.0 33.0 39.0 27.0 40.0 24 32.61796045254002 35.0 31.0 37.0 22.0 39.0 25 31.34551205171391 34.0 28.0 37.0 18.0 39.0 26 30.76681546394877 33.0 25.0 37.0 18.0 39.0 27 32.59184588007603 35.0 31.0 38.0 22.0 39.0 28 32.17280257010863 35.0 30.0 38.0 20.0 39.0 29 32.684181016006896 35.0 31.0 38.0 21.0 40.0 30 31.494533756489133 34.0 29.0 38.0 17.0 40.0 31 31.635300892350724 34.0 30.0 37.0 18.0 40.0 32 31.82611500543377 35.0 30.0 37.0 18.0 40.0 33 31.32144326147478 35.0 30.0 38.0 15.0 40.0 34 31.073702281317786 35.0 30.0 38.0 15.0 40.0 35 30.485434896498575 35.0 27.0 38.0 10.0 40.0 36 30.252964760589357 35.0 26.0 38.0 9.0 40.0 37 30.636426613786625 35.0 29.0 38.0 9.0 40.0 38 30.483322003957344 35.0 27.0 38.0 9.0 40.0 39 30.115074708936064 35.0 26.0 38.0 8.0 40.0 40 29.79115053060447 34.0 24.0 38.0 8.0 40.0 41 29.210505578815653 34.0 23.0 38.0 8.0 40.0 42 29.84010642397267 35.0 25.0 38.0 8.0 40.0 43 29.855970436823213 35.0 24.0 38.0 8.0 40.0 44 29.93698774262544 35.0 25.0 38.0 8.0 40.0 45 30.241006135181827 35.0 26.0 38.0 8.0 40.0 46 29.943640323341835 35.0 24.0 38.0 7.0 40.0 47 30.10823378636405 35.0 25.0 38.0 7.0 40.0 48 29.872213298233916 35.0 25.0 38.0 7.0 40.0 49 29.804836705446327 35.0 26.0 38.0 7.0 40.0 50 30.044719284041168 35.0 26.0 38.0 7.0 40.0 51 28.155503262427317 33.0 22.0 37.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 4.0 10 14.0 11 15.0 12 30.0 13 47.0 14 57.0 15 153.0 16 371.0 17 728.0 18 1311.0 19 2255.0 20 3284.0 21 4835.0 22 6803.0 23 9205.0 24 12785.0 25 17576.0 26 22402.0 27 24472.0 28 25167.0 29 26829.0 30 30134.0 31 34538.0 32 39347.0 33 43221.0 34 46671.0 35 48634.0 36 36434.0 37 20148.0 38 4380.0 39 73.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.693509349982463 2.503864255313622 37.17067235877608 34.63195403592783 2 34.20201504137027 14.97837315933721 36.8621813883609 13.95743041093162 3 11.954945164376978 14.925767330697989 59.05123331442699 14.068054190498044 4 11.16239397652438 2.848724687504059 69.39682979524859 16.592051540722974 5 20.503933530478907 3.5178794871905885 58.66156050969202 17.316626472638475 6 14.233015677835844 12.264085589466712 61.19032052753038 12.312578205167062 7 55.67103821824275 1.042158267774492 40.17245186458437 3.1143516493983885 8 56.32352368128228 9.291531544013543 30.118244047747904 4.266700726956266 9 52.292358516299146 2.7218645410736784 29.9409429215935 15.044834021033674 10 29.93488134463096 22.34881777600741 35.340725570762416 12.375575308599213 11 20.1917623169079 17.596324952481567 47.06727917458641 15.144633556024125 12 17.239557851257562 16.198482007940665 47.836882963937946 18.725077176863827 13 16.883440204708116 17.567532461909483 52.94982313184363 12.599204201538775 14 14.72097262332062 21.291722050718082 45.68004398972996 18.307261336231345 15 11.10610790472933 17.839221000766354 54.7698116148474 16.284859479656916 16 13.135004308049341 18.58890818009811 45.40315981347662 22.872927698375932 17 13.925823616769787 18.63848322025606 49.44146897987989 17.99422418309426 18 13.513636383316808 17.676640847235273 48.980572645835046 19.829150123612873 19 13.684226477834113 20.557188813792685 45.62527331217554 20.13331139619766 20 15.239886908292672 20.24501760022168 50.8505691387798 13.664526352705844 21 15.827426903876379 22.93029619462858 46.33577672614228 14.906500175352763 22 13.704143087853899 17.12287249472859 48.447586842914234 20.725397574503276 23 14.114165472391683 22.702337603858627 46.9557894554539 16.227707468295787 24 15.025566865688445 18.538900170157124 46.43341141221754 20.00212155193689 25 12.475591328481185 25.28327048055316 44.01917190199296 18.221966288972695 26 13.544160753021048 19.06820572992211 48.0113697865026 19.376263730554243 27 14.748033234760547 20.40954611777644 44.86714322207453 19.975277425388484 28 11.234266960508826 19.768534353987434 50.571953083394305 18.425245602109428 29 14.804319306555596 16.48510800431238 48.29734632819975 20.41322636093227 30 13.158601161224958 20.756571398882073 47.81783229348424 18.266995146408732 31 14.958023579534386 18.094023718084713 46.219307854504834 20.728644847876065 32 15.818551023324082 21.24322943501773 44.045366573866815 18.892852967791377 33 14.15269978308214 18.491489978914373 43.62993206704104 23.725878170962446 34 15.18013707823331 19.943670631226645 44.74807653173885 20.128115758801194 35 12.676056338028168 20.542467841169366 42.3074258647489 24.474049956053566 36 14.447768690223109 20.018141433909328 43.6316639461732 21.902425929694367 37 14.038395760359885 21.487857362434674 40.573598368569854 23.90014850863558 38 15.40398245606439 21.232405190441757 43.18289076605344 20.180721587440413 39 16.468222182773864 21.414252499318074 38.40182193684703 23.715703381061033 40 15.895403159813476 20.76176703627854 44.62208232487455 18.720747479033438 41 15.126665310028011 22.870979334352256 37.130189684061946 24.872165671557784 42 15.523049146400073 21.068959097344596 43.55069859674494 19.857293159510398 43 17.518823361317615 20.45847170325983 37.93529699562267 24.08740793979988 44 17.715175157925728 21.204695124327273 37.62507414607534 23.455055571671654 45 15.72611197464529 20.516489654187033 39.12791226300317 24.62948610816451 46 19.674796395959525 22.869896909894656 36.4820339188528 20.97327277529301 47 13.745708187025626 20.276840879275035 45.17152097955084 20.8059299541485 48 16.77259994025017 22.122158094586577 37.07087282378563 24.034369141377624 49 15.519585388135763 19.832830366768704 42.757064984434734 21.8905192606608 50 16.643358460013076 19.363924091737637 39.65981564146638 24.332901806782907 51 16.387689803128637 19.533864731580383 37.77033550828487 26.3081099570061 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 62.0 1 292.0 2 522.0 3 18022.0 4 35522.0 5 23662.5 6 11803.0 7 11158.0 8 10513.0 9 10283.5 10 10054.0 11 9585.0 12 9116.0 13 8551.5 14 7987.0 15 7319.5 16 6652.0 17 6189.0 18 5726.0 19 5279.0 20 4832.0 21 4623.0 22 4414.0 23 4332.5 24 4251.0 25 4560.0 26 5230.0 27 5591.0 28 6360.5 29 7130.0 30 7681.5 31 8233.0 32 9207.0 33 10181.0 34 11559.5 35 12938.0 36 13406.5 37 13875.0 38 14629.5 39 15384.0 40 16942.5 41 18501.0 42 19777.0 43 21053.0 44 22980.5 45 24908.0 46 44325.0 47 63742.0 48 52012.5 49 40283.0 50 36072.5 51 31862.0 52 26235.5 53 20609.0 54 17944.0 55 15279.0 56 13076.0 57 10873.0 58 9710.0 59 8547.0 60 7206.5 61 5866.0 62 4895.5 63 3925.0 64 3314.5 65 2704.0 66 2177.5 67 1651.0 68 1287.5 69 924.0 70 762.5 71 601.0 72 433.5 73 266.0 74 258.0 75 232.5 76 215.0 77 169.0 78 123.0 79 80.0 80 37.0 81 29.0 82 21.0 83 23.5 84 26.0 85 14.0 86 2.0 87 1.5 88 1.0 89 0.5 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 461926.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.06448263099178 #Duplication Level Percentage of deduplicated Percentage of total 1 81.4133035348174 36.68848403076441 2 7.074727513762722 6.376378703259197 3 2.841646819991448 3.841720312887529 4 1.786624932049404 3.2205331287374896 5 1.2781687304019396 2.880000627533751 6 0.9669764780279816 2.614577681920175 7 0.7550806631904572 2.3819123601940877 8 0.6401765292612398 2.3079379266929396 9 0.537053001939067 2.1781814110024573 >10 2.6085193176489594 18.06378822474032 >50 0.052053179720581606 1.616132964783392 >100 0.03732114772418703 3.1855722344317714 >500 0.002946406399277923 0.9221451546284956 >1k 0.0034374741324909104 2.768205840952208 >5k 0.0014732031996389616 5.318434005564346 >10k+ 4.910677332129873E-4 5.6359953919074925 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 25468 5.513437217216611 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCG 9437 2.0429679212687746 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGC 7349 1.5909474677762239 No Hit GAATCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTC 7247 1.568866008841243 TruSeq Adapter, Index 16 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCT 2706 0.5858081164515528 TruSeq Adapter, Index 27 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 2255 0.48817343037629407 TruSeq Adapter, Index 16 (95% over 24bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCTCTCTCT 2023 0.43794893554378844 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTC 1701 0.3682408004745349 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTA 1488 0.3221295185808982 No Hit GAATGATACCTGTCTCTTATACACATCTGACGGTCTCTCTCTCGTATGCCG 1216 0.2632456280876158 No Hit GAATGACTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCT 1120 0.2424630785017514 No Hit GAATGATACGGCTGTCTCTTATACACATCTGAGGCTCTCTCTCTCGTATGC 831 0.17989894485263874 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCTCTCTCTCTCGTATGCCG 780 0.16885821538514825 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGT 682 0.14764269601624502 No Hit CTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGCT 675 0.14612730177560906 TruSeq Adapter, Index 27 (95% over 24bp) GAATGCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTT 671 0.1452613622095314 No Hit CCTGTCTCTTATACACATCTGACGCTCTCTCTCTCGTATGCCGTCTTCTGC 528 0.1143040227222542 TruSeq Adapter, Index 16 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1648489151942086E-4 0.0 0.0 0.1835791880084689 0.0 2 2.1648489151942086E-4 0.0 0.0 1.0122833527448118 0.0 3 2.1648489151942086E-4 0.0 0.0 1.2822400124695297 0.0 4 2.1648489151942086E-4 0.0 0.0 2.367262288764867 0.0 5 2.1648489151942086E-4 0.0 0.0 4.853807752756935 0.0 6 2.1648489151942086E-4 0.0 0.0 5.386144101003191 0.0 7 2.1648489151942086E-4 0.0 0.0 6.001827132484424 0.0 8 2.1648489151942086E-4 0.0 0.0 6.889415187714049 0.0 9 2.1648489151942086E-4 0.0 0.0 7.151794876235588 0.0 10 2.1648489151942086E-4 0.0 0.0 10.341266782991214 0.0 11 2.1648489151942086E-4 0.0 0.0 11.227122959088685 0.0 12 2.1648489151942086E-4 0.0 0.0 14.049220004935856 0.0 13 2.1648489151942086E-4 0.0 0.0 14.446469780873993 0.0 14 2.1648489151942086E-4 0.0 0.0 14.678541584582812 0.0 15 2.1648489151942086E-4 0.0 0.0 15.347046929594784 0.0 16 2.1648489151942086E-4 0.0 0.0 15.765512224901824 0.0 17 2.1648489151942086E-4 0.0 0.0 16.15475205985374 0.0 18 2.1648489151942086E-4 0.0 0.0 16.571485476028627 0.0 19 2.1648489151942086E-4 0.0 0.0 17.540038880686517 0.0 20 2.1648489151942086E-4 0.0 0.0 17.953308538597092 0.0 21 2.1648489151942086E-4 0.0 0.0 18.400566324476216 0.0 22 2.1648489151942086E-4 0.0 0.0 19.06322657741716 0.0 23 2.1648489151942086E-4 0.0 0.0 19.544256006373317 0.0 24 2.1648489151942086E-4 0.0 0.0 19.930032083060922 0.0 25 2.1648489151942086E-4 0.0 0.0 20.239388993042176 0.0 26 4.3296978303884173E-4 0.0 0.0 20.549395357697986 0.0 27 4.3296978303884173E-4 0.0 0.0 20.87801942302447 0.0 28 4.3296978303884173E-4 0.0 0.0 21.161398146023387 0.0 29 4.3296978303884173E-4 0.0 0.0 21.47508475383503 0.0 30 4.3296978303884173E-4 0.0 0.0 21.843542039201083 0.0 31 4.3296978303884173E-4 0.0 0.0 22.150084645592585 0.0 32 4.3296978303884173E-4 0.0 0.0 22.452514039045216 0.0 33 4.3296978303884173E-4 0.0 0.0 22.759922585002794 0.0 34 4.3296978303884173E-4 0.0 0.0 23.065382766936697 0.0 35 4.3296978303884173E-4 0.0 0.0 23.408727804886496 0.0 36 4.3296978303884173E-4 0.0 0.0 23.722847382481177 0.0 37 4.3296978303884173E-4 0.0 0.0 24.03566805072674 0.0 38 4.3296978303884173E-4 0.0 0.0 24.369920723232724 0.0 39 4.3296978303884173E-4 0.0 0.0 24.797261899092064 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTGCGG 20 7.0288987E-4 45.000004 2 CGATTCG 40 6.7993824E-9 45.000004 10 CGTTAGG 20 7.0288987E-4 45.000004 2 GCGGGTC 20 7.0288987E-4 45.000004 5 ATACGGA 20 7.0288987E-4 45.000004 28 ATCCGGC 45 3.8380676E-10 45.0 6 CCGATGA 125 0.0 44.999996 18 CGTTTTT 10510 0.0 44.336346 1 CTTTGCG 145 0.0 43.448273 1 CACCGGT 125 0.0 43.199997 16 GCGACCT 120 0.0 43.124996 11 GGCGACT 190 0.0 42.63158 10 ACGGCTG 1265 0.0 42.332016 8 TACGGCT 1290 0.0 42.03488 7 CGGTGTC 75 0.0 42.000004 19 TGATACC 1545 0.0 41.796116 4 GCGAGAC 70 0.0 41.785713 21 GCGATTC 70 0.0 41.785713 9 GAATGAT 4385 0.0 41.664764 1 GCGACTG 200 0.0 41.625 11 >>END_MODULE