SRR2933254.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933254.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	861060
Sequences flagged as poor quality	0
Sequence length	51
%GC	31

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	35278	4.0970431793370965	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC	19866	2.3071562957285208	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG	19244	2.2349197500754885	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC	12108	1.406173785798899	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT	4742	0.5507165586602559	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC	3522	0.40903072956588393	No Hit
GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC	3105	0.3606020486377256	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAACTAGT	2919	0.3390007664971082	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT	2747	0.3190253873133115	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT	2668	0.30985064919982347	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTA	2265	0.26304787122848583	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGT	1102	0.1279817898868836	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	1042	0.1210136343576522	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	952	0.11056140106380508	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	904	0.10498687664041995	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCGCG	25	3.889988E-5	45.0	1
GCGATTA	35	1.211447E-7	45.0	9
GGCTGCG	20	7.0323E-4	45.0	1
CTAGCGG	20	7.0323E-4	45.0	2
CGTTTTT	35030	0.0	44.59535	1
ACGGCTG	1480	0.0	43.631756	8
TACGGCT	1490	0.0	43.489933	7
CGGCTGT	1515	0.0	43.069305	9
GATACCT	2280	0.0	42.335526	5
CGACCTG	140	0.0	41.785713	12
TGATACC	2360	0.0	41.5678	4
ATACCTG	2330	0.0	41.42704	6
GAATCTG	2560	0.0	41.132812	1
CGCTTTT	860	0.0	40.813953	1
CCGTTTG	50	1.0804797E-9	40.5	1
CCGATGA	495	0.0	40.454544	18
TACCTGT	2435	0.0	40.287476	7
GGCGACT	320	0.0	40.078125	10
ATGATAC	6185	0.0	40.016167	3
AGCGACT	45	1.9274012E-8	40.000004	19