##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933254.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 861060 Sequences flagged as poor quality 0 Sequence length 51 %GC 31 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.661347641279352 31.0 28.0 33.0 25.0 34.0 2 29.0860311708824 31.0 28.0 33.0 16.0 34.0 3 28.975116716605115 31.0 28.0 34.0 16.0 34.0 4 33.45571737161173 35.0 32.0 37.0 28.0 37.0 5 34.44445102548022 35.0 35.0 37.0 32.0 37.0 6 34.047719090423435 35.0 33.0 37.0 28.0 37.0 7 34.10830139595382 35.0 33.0 37.0 30.0 37.0 8 33.94986644368569 35.0 35.0 37.0 28.0 37.0 9 35.225546419529415 37.0 34.0 39.0 30.0 39.0 10 35.25571737161174 37.0 34.0 39.0 28.0 39.0 11 35.61482010545142 37.0 34.0 39.0 30.0 39.0 12 35.74667735117181 37.0 35.0 39.0 30.0 39.0 13 35.911881866536596 37.0 35.0 39.0 30.0 39.0 14 36.70529347548371 39.0 35.0 41.0 30.0 41.0 15 37.07753931201078 39.0 36.0 41.0 31.0 41.0 16 37.03247625020324 39.0 36.0 41.0 31.0 41.0 17 36.2001080064107 38.0 34.0 41.0 29.0 41.0 18 35.8571516502915 38.0 34.0 39.0 29.0 40.0 19 35.0283441339744 37.0 34.0 37.0 27.0 40.0 20 34.00516224188791 35.0 33.0 37.0 27.0 39.0 21 34.130306831115135 35.0 33.0 37.0 29.0 39.0 22 34.41285508559218 35.0 33.0 38.0 29.0 40.0 23 34.77009732190556 35.0 33.0 38.0 30.0 40.0 24 34.102335493461545 35.0 33.0 38.0 27.0 40.0 25 33.13838408473277 35.0 33.0 37.0 23.0 40.0 26 32.98465147608761 35.0 31.0 37.0 23.0 40.0 27 33.93965693447611 35.0 33.0 38.0 25.0 40.0 28 33.61787564165099 35.0 33.0 38.0 24.0 40.0 29 33.39634287970641 35.0 33.0 38.0 22.0 40.0 30 32.55182101131164 35.0 32.0 38.0 20.0 40.0 31 32.27297865421689 35.0 31.0 38.0 18.0 40.0 32 31.209762385896454 35.0 30.0 38.0 14.0 40.0 33 29.96803358650965 35.0 23.0 38.0 8.0 40.0 34 28.87208092351288 35.0 18.0 39.0 7.0 40.0 35 28.09727080575105 35.0 15.0 39.0 7.0 40.0 36 27.229828351102128 34.0 12.0 39.0 7.0 40.0 37 27.005839314333496 34.0 10.0 39.0 7.0 40.0 38 26.822511787796437 33.0 10.0 39.0 7.0 40.0 39 26.452954497944393 33.0 10.0 38.0 7.0 40.0 40 26.339315494855178 33.0 10.0 38.0 7.0 40.0 41 26.048622627923724 33.0 10.0 38.0 7.0 40.0 42 25.98955589622094 33.0 10.0 38.0 7.0 40.0 43 25.918891830999 33.0 10.0 38.0 7.0 40.0 44 25.866153345876015 33.0 10.0 38.0 7.0 40.0 45 25.932713167491233 33.0 10.0 38.0 7.0 40.0 46 25.72671939237684 32.0 10.0 38.0 7.0 40.0 47 25.563044387150722 32.0 10.0 38.0 7.0 40.0 48 25.437295891110956 32.0 10.0 38.0 7.0 40.0 49 25.50460827352333 32.0 10.0 38.0 7.0 40.0 50 25.473486168211274 32.0 10.0 38.0 7.0 40.0 51 24.634434301906953 30.0 10.0 37.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 13.0 10 33.0 11 59.0 12 74.0 13 110.0 14 166.0 15 289.0 16 572.0 17 1181.0 18 2496.0 19 4380.0 20 7201.0 21 11015.0 22 15886.0 23 24137.0 24 35179.0 25 51408.0 26 64595.0 27 62421.0 28 51085.0 29 41893.0 30 38247.0 31 38399.0 32 41129.0 33 46659.0 34 53081.0 35 61646.0 36 68135.0 37 72324.0 38 58065.0 39 9176.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.836294799433254 2.0018349476226978 25.757090098250995 51.40478015469305 2 50.24655656980931 12.798759668315796 25.69774464032704 11.256939121547859 3 8.891714863075743 13.085266996492695 66.16902422595405 11.853993914477504 4 7.61840057603419 2.0038092583559797 77.56997189510602 12.807818270503798 5 15.926067869834853 2.409239774231761 68.67779248832834 12.986899867605045 6 10.16990685898776 10.398926904048498 70.72561726244396 8.705548974519777 7 41.44612454416649 0.7059902910366292 56.00202076510348 1.8458643996934012 8 41.157178361554365 7.456739367756021 49.0027408078415 2.3833414628481173 9 38.78336004459619 1.9494576452279748 48.03544468445869 11.23173762571714 10 22.11704178570599 14.008431468190368 53.89032123196989 9.984205514133743 11 16.338582677165352 13.363993217661951 59.370427147933945 10.926996957238751 12 12.41133022089053 12.550693331475157 61.376326852948694 13.66164959468562 13 12.082665551761782 13.04543237405059 65.84326295496248 9.028639119225142 14 11.36273894966669 17.23445520637354 59.47622697605277 11.926578867906997 15 9.594337212273246 13.70880078043342 65.73014656353796 10.966715443755373 16 10.827816876872692 15.579634404106566 58.414860753025344 15.177687965995402 17 11.08540635960328 15.603558404756928 62.076742619561934 11.234292616077859 18 11.596172159895943 14.639281815436785 60.882633033702646 12.881912990964626 19 10.969502705967065 16.82275335052145 58.14449631849116 14.063247625020322 20 13.045200102199614 15.836643207209718 62.10136343576522 9.016793254825448 21 12.752421434046408 18.856641813578612 59.26044642649757 9.130490325877407 22 11.638677908624254 12.73174923930969 61.10445265138318 14.525120200682878 23 11.70661742503426 17.95031705107658 60.44863308015701 9.894432443732144 24 13.182821173901935 14.660883097577404 58.88799851346015 13.268297215060507 25 10.607623162148979 21.243583490116833 57.053515434464494 11.09527791326969 26 11.594546256939122 14.511532297400878 60.3853390007665 13.508582444893502 27 13.881030357930923 15.547813160523077 57.312846956077394 13.25830952546861 28 10.429470652451629 16.431607553480593 60.35049822312034 12.788423570947439 29 16.498153438784755 14.397719090423431 56.75365247485657 12.350474995935242 30 14.352658351334401 17.721993821568763 57.234803614149996 10.690544212946833 31 13.88230785311128 17.98388033354238 54.49794439411888 13.635867419227463 32 14.88432861821476 20.82874596427659 52.43606717301931 11.85085824448935 33 13.216152184516758 17.981557615032635 49.30469421410819 19.497595986342414 34 16.943999256730077 21.137202982370567 49.206210949295055 12.712586811604302 35 15.893898218474902 24.556825308340883 44.20969502705967 15.339581446124544 36 18.86256474577846 24.515597054792927 41.46575151557383 15.156086683854783 37 17.371495598448426 25.8005249343832 42.726987666364714 14.10099180080366 38 17.308433790908882 25.481383411144403 39.66854806865956 17.54163472928716 39 19.326179360323323 23.83236940515179 41.74842635820965 15.093024876315239 40 18.328455624462872 25.528070053190255 40.46454370194876 15.678930620398113 41 19.976656678977076 25.28476528929459 39.81859568438901 14.919982347339324 42 17.187884700253175 26.13999024458226 41.49699207952988 15.175132975634684 43 21.20525863470606 22.2719671103059 38.482684133509856 18.040090121478176 44 20.227161870252942 23.58221262165238 37.44280305669756 18.747822451397113 45 17.23886837154205 23.455508326945857 38.93596265068636 20.36966065082573 46 20.551064966436716 24.854017141662602 37.19055582653938 17.404362065361298 47 16.624160917938354 22.473230669175205 43.235663019998604 17.666945392887836 48 18.720995052609574 23.930852669964928 37.47532111583397 19.872831161591524 49 16.964206907764847 23.238101874433838 40.72317840800873 19.074512809792584 50 18.106287599005878 22.02401690939075 39.57633614382273 20.293359347780644 51 18.19780270828978 21.892551041739253 37.687965995401015 22.221680254569947 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 51.0 1 1401.0 2 2751.0 3 38544.0 4 74337.0 5 55723.5 6 37110.0 7 35659.5 8 34209.0 9 33636.0 10 33063.0 11 32846.0 12 32629.0 13 31438.5 14 30248.0 15 28821.0 16 27394.0 17 26120.5 18 24847.0 19 23211.5 20 21576.0 21 19907.0 22 18238.0 23 17028.0 24 15818.0 25 15007.0 26 13812.0 27 13428.0 28 13702.0 29 13976.0 30 14512.5 31 15049.0 32 15843.5 33 16638.0 34 18023.0 35 19408.0 36 20540.5 37 21673.0 38 22568.5 39 23464.0 40 24510.0 41 25556.0 42 26181.0 43 26806.0 44 28520.5 45 30235.0 46 66365.5 47 102496.0 48 71826.0 49 41156.0 50 37867.5 51 34579.0 52 30686.5 53 26794.0 54 24777.5 55 22761.0 56 20640.5 57 18520.0 58 16565.5 59 14611.0 60 12554.5 61 10498.0 62 8708.0 63 6918.0 64 5544.0 65 4170.0 66 3169.5 67 2169.0 68 1692.0 69 1215.0 70 928.5 71 642.0 72 568.5 73 495.0 74 500.0 75 476.5 76 448.0 77 342.5 78 237.0 79 162.0 80 87.0 81 62.0 82 37.0 83 25.0 84 13.0 85 9.5 86 6.0 87 4.0 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 861060.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.24413815700673 #Duplication Level Percentage of deduplicated Percentage of total 1 84.69961258011665 50.179555495413766 2 8.20607992420095 9.723242655136007 3 3.2561257550050327 5.78719092258318 4 1.5618964356284193 3.7013283287722576 5 0.8066043541678253 2.3893289898180914 6 0.4380903031841282 1.5572569468251274 7 0.26181032122036324 1.0857508788916657 8 0.16237453975808425 0.7695791733286661 9 0.10872329300549971 0.5797096012532292 >10 0.42121314819002437 4.356622266637146 >50 0.03351146418253739 1.3743266107287395 >100 0.039029867742394746 4.580087669082678 >500 0.002365446527089885 0.998956370553728 >1k 0.0017740848953174137 2.8158564422248644 >5k 0.0 0.0 >10k+ 7.884821756966282E-4 10.101207648750906 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35278 4.0970431793370965 No Hit GAATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTC 19866 2.3071562957285208 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCG 19244 2.2349197500754885 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGC 12108 1.406173785798899 No Hit GAACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCT 4742 0.5507165586602559 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTC 3522 0.40903072956588393 No Hit GCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTTCTGC 3105 0.3606020486377256 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAACTAGT 2919 0.3390007664971082 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCT 2747 0.3190253873133115 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGAACTAGTCGTATGCCGTCTT 2668 0.30985064919982347 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAACTAGTCGTA 2265 0.26304787122848583 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGAACTAGTCGT 1102 0.1279817898868836 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 1042 0.1210136343576522 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 952 0.11056140106380508 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 904 0.10498687664041995 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03774417578333682 0.0 2 0.0 0.0 0.0 0.44503286646691287 0.0 3 0.0 0.0 0.0 0.5274893735628179 0.0 4 0.0 0.0 0.0 1.1953870810396487 0.0 5 0.0 0.0 0.0 3.896128028244257 0.0 6 0.0 0.0 0.0 4.3541681183657355 0.0 7 0.0 0.0 0.0 4.8313706361926 0.0 8 0.0 0.0 0.0 5.414372982138294 0.0 9 0.0 0.0 0.0 5.568485355259796 0.0 10 0.0 0.0 0.0 8.233688709265325 0.0 11 0.0 0.0 0.0 8.384200868696723 0.0 12 0.0 0.0 0.0 10.130769052098577 0.0 13 0.0 0.0 0.0 10.300095231458899 0.0 14 1.161359254871902E-4 0.0 0.0 10.425522030985064 0.0 15 1.161359254871902E-4 0.0 0.0 10.781246370752328 0.0 16 1.161359254871902E-4 0.0 0.0 10.980535618888347 0.0 17 1.161359254871902E-4 0.0 0.0 11.0825029614661 0.0 18 1.161359254871902E-4 0.0 0.0 11.155320186746568 0.0 19 1.161359254871902E-4 0.0 0.0 11.634380879381228 0.0 20 2.322718509743804E-4 0.0 0.0 11.734838454927647 0.0 21 2.322718509743804E-4 0.0 0.0 11.799874573200475 0.0 22 2.322718509743804E-4 0.0 0.0 11.949341509302487 0.0 23 2.322718509743804E-4 0.0 0.0 12.017629433488956 0.0 24 2.322718509743804E-4 0.0 0.0 12.082665551761782 0.0 25 2.322718509743804E-4 0.0 0.0 12.139107611548557 0.0 26 2.322718509743804E-4 0.0 0.0 12.223190021601281 0.0 27 2.322718509743804E-4 0.0 0.0 12.347571597798062 0.0 28 2.322718509743804E-4 0.0 0.0 12.41713701716489 0.0 29 2.322718509743804E-4 0.0 0.0 12.492276960955103 0.0 30 2.322718509743804E-4 0.0 0.0 12.578565953592085 0.0 31 2.322718509743804E-4 0.0 0.0 12.659396557731169 0.0 32 2.322718509743804E-4 0.0 0.0 12.747079181473998 0.0 33 2.322718509743804E-4 0.0 0.0 12.834064989663903 0.0 34 2.322718509743804E-4 0.0 0.0 12.942768215919912 0.0 35 2.322718509743804E-4 0.0 0.0 13.040322393329152 0.0 36 2.322718509743804E-4 0.0 0.0 13.127540473370033 0.0 37 2.322718509743804E-4 0.0 0.0 13.229159408171324 0.0 38 2.322718509743804E-4 0.0 0.0 13.339372401458668 0.0 39 2.322718509743804E-4 0.0 0.0 13.470605997259192 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTCGCG 25 3.889988E-5 45.0 1 GCGATTA 35 1.211447E-7 45.0 9 GGCTGCG 20 7.0323E-4 45.0 1 CTAGCGG 20 7.0323E-4 45.0 2 CGTTTTT 35030 0.0 44.59535 1 ACGGCTG 1480 0.0 43.631756 8 TACGGCT 1490 0.0 43.489933 7 CGGCTGT 1515 0.0 43.069305 9 GATACCT 2280 0.0 42.335526 5 CGACCTG 140 0.0 41.785713 12 TGATACC 2360 0.0 41.5678 4 ATACCTG 2330 0.0 41.42704 6 GAATCTG 2560 0.0 41.132812 1 CGCTTTT 860 0.0 40.813953 1 CCGTTTG 50 1.0804797E-9 40.5 1 CCGATGA 495 0.0 40.454544 18 TACCTGT 2435 0.0 40.287476 7 GGCGACT 320 0.0 40.078125 10 ATGATAC 6185 0.0 40.016167 3 AGCGACT 45 1.9274012E-8 40.000004 19 >>END_MODULE