SRR2933252.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933252.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	396214
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14288	3.6061320397562935	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	10461	2.6402398703730814	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	7987	2.0158298293346526	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	6562	1.656175703029171	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCT	2597	0.6554538708879545	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTC	1729	0.4363803399173174	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGCAGTAT	1480	0.3735355136365701	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	1447	0.3652066812379169	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCT	1260	0.3180099643122151	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTA	1193	0.3010999106543434	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTT	1191	0.3005951329332129	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGT	621	0.1567334824110203	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	481	0.12139904193188529	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	447	0.1128178206726668	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	431	0.10877959890362278	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGTTG	35	1.2092278E-7	45.000004	1
ACATACG	60	0.0	45.000004	17
TCGTTAG	20	7.0276856E-4	45.0	1
GTACCGT	20	7.0276856E-4	45.0	37
ACCGGTC	20	7.0276856E-4	45.0	17
GATCAAT	20	7.0276856E-4	45.0	9
TGCGTTG	25	3.886163E-5	45.0	1
GTTGCGT	20	7.0276856E-4	45.0	39
CGTTTTT	11505	0.0	44.4133	1
AATGATC	235	0.0	42.12766	2
GATACCT	1000	0.0	41.85	5
TGATACC	1000	0.0	41.624996	4
CCGATGA	330	0.0	41.590908	18
ATACCTG	1040	0.0	40.67308	6
GAATCTG	1300	0.0	40.673077	1
TACGGCT	820	0.0	40.335365	7
ATGATCT	225	0.0	40.0	3
CGATGAA	350	0.0	39.857143	19
ACGGCTG	830	0.0	39.8494	8
AATCTGT	1330	0.0	39.755642	2