SRR2933251.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933251.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315830
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22904	7.252002659658677	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCG	2868	0.9080834626222969	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTC	2408	0.7624354874457778	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	1982	0.6275527973910014	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCT	844	0.2672323718456131	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	535	0.16939492765095146	TruSeq Adapter, Index 15 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGCAGTAT	529	0.16749517145299686	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTC	492	0.15578000823227686	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	420	0.13298293385682172	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	332	0.10511984295348764	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTT	329	0.10416996485451034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGCA	30	2.1604847E-6	45.000004	15
GCAACGA	20	7.025508E-4	45.000004	9
TGCTACG	20	7.025508E-4	45.000004	4
GTACGGG	20	7.025508E-4	45.000004	3
CGTTTTT	10250	0.0	44.51707	1
TACGGCT	310	0.0	41.370968	7
GTTTTTT	11420	0.0	40.547283	2
CATATGC	50	1.0768417E-9	40.5	33
CCGATGA	100	0.0	40.5	18
TAGTTAA	90	0.0	40.0	38
CATAGTT	90	0.0	40.0	36
ACGAGAG	45	1.920671E-8	40.0	15
TGATACC	380	0.0	39.671055	4
ACGGCTG	330	0.0	39.545452	8
TTGCCCG	40	3.4476034E-7	39.375004	1
CTGGGTA	80	0.0	39.375004	5
CGACCAC	345	0.0	39.130436	12
TGGGCGA	290	0.0	38.793102	6
TGGGATC	145	0.0	38.793102	6
ATGATAC	1230	0.0	38.780487	3