##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933250.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 787900 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.488488386851124 31.0 28.0 33.0 25.0 34.0 2 28.756557938824724 31.0 28.0 33.0 16.0 34.0 3 28.744707450184034 31.0 28.0 34.0 16.0 34.0 4 33.173532174133776 35.0 32.0 37.0 28.0 37.0 5 34.239663662901386 35.0 33.0 37.0 30.0 37.0 6 33.73215890341414 35.0 33.0 37.0 28.0 37.0 7 33.65384693489021 35.0 33.0 37.0 29.0 37.0 8 33.60502982612007 35.0 33.0 37.0 28.0 37.0 9 34.7559639548166 37.0 34.0 39.0 28.0 39.0 10 34.69803020687905 37.0 33.0 39.0 27.0 39.0 11 35.08365147861404 37.0 34.0 39.0 28.0 39.0 12 35.16625587003427 37.0 34.0 39.0 28.0 39.0 13 35.341860642213476 37.0 34.0 39.0 30.0 39.0 14 36.089695392816346 38.0 34.0 40.0 28.0 41.0 15 36.42597156999619 38.0 34.0 40.0 30.0 41.0 16 36.34983119685239 38.0 34.0 40.0 30.0 41.0 17 35.63150399796928 38.0 33.0 40.0 27.0 41.0 18 35.366498286584594 38.0 33.0 39.0 27.0 40.0 19 34.69261327579642 37.0 33.0 38.0 27.0 40.0 20 34.00795405508313 35.0 33.0 38.0 27.0 40.0 21 34.323235182129714 35.0 33.0 38.0 27.0 40.0 22 34.79787663409062 35.0 33.0 39.0 29.0 40.0 23 35.130965858611496 35.0 33.0 39.0 30.0 40.0 24 34.55797436222871 35.0 33.0 39.0 27.0 40.0 25 33.525670770402336 35.0 33.0 38.0 24.0 40.0 26 33.546296484325424 35.0 32.0 38.0 24.0 40.0 27 34.37200659982231 35.0 33.0 38.0 27.0 40.0 28 34.10831196852392 35.0 33.0 39.0 25.0 40.0 29 34.13724711257774 35.0 33.0 39.0 24.0 40.0 30 33.40487879172484 35.0 33.0 39.0 22.0 40.0 31 33.33328468079706 35.0 33.0 39.0 21.0 40.0 32 32.72351567457799 35.0 32.0 39.0 18.0 40.0 33 32.072882345475314 35.0 31.0 39.0 14.0 40.0 34 31.376609975885266 35.0 30.0 39.0 10.0 40.0 35 30.95099251174007 35.0 27.0 40.0 8.0 41.0 36 30.2890354105851 35.0 23.0 40.0 7.0 41.0 37 30.215257012311206 35.0 23.0 40.0 7.0 40.0 38 29.9014925751999 35.0 22.0 39.0 7.0 40.0 39 29.469145830689175 35.0 21.0 39.0 7.0 40.0 40 29.33727249650971 35.0 21.0 39.0 7.0 40.0 41 28.85344713796167 35.0 18.0 39.0 7.0 40.0 42 29.04692219824851 35.0 18.0 39.0 7.0 40.0 43 28.988770148496002 35.0 18.0 39.0 7.0 40.0 44 29.025826881583956 35.0 18.0 39.0 7.0 40.0 45 29.10748318314507 35.0 20.0 39.0 7.0 40.0 46 28.88243812666582 35.0 19.0 39.0 7.0 40.0 47 28.82966493209798 35.0 20.0 39.0 7.0 40.0 48 28.68909633202183 35.0 19.0 38.0 7.0 40.0 49 28.894369843888818 35.0 20.0 39.0 7.0 40.0 50 28.894424419342556 35.0 20.0 39.0 7.0 40.0 51 27.818126665820536 33.0 18.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 28.0 10 44.0 11 53.0 12 70.0 13 107.0 14 133.0 15 229.0 16 384.0 17 820.0 18 1591.0 19 3003.0 20 4973.0 21 7127.0 22 10486.0 23 15203.0 24 22120.0 25 31566.0 26 40954.0 27 43405.0 28 39647.0 29 35691.0 30 35618.0 31 38027.0 32 43293.0 33 50378.0 34 58497.0 35 68980.0 36 76631.0 37 81697.0 38 66636.0 39 10501.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.821170199263868 2.3117146846046452 33.29559588780302 40.57151922832847 2 39.025637771290775 15.162457164614798 32.20345221474806 13.608452849346364 3 10.750222109404747 15.375936032491433 59.76139103947201 14.112450818631805 4 9.944536108643229 2.6186064221347887 71.84960020307145 15.587257266150525 5 19.69539281634725 2.950374412996573 60.86698819647164 16.487244574184544 6 12.997080847823328 12.880822439395862 63.35562888691458 10.766467825866227 7 50.951516689935275 1.0836400558446504 45.30574946059144 2.659093793628633 8 50.48813301180353 9.369336210178956 37.070313491559844 3.072217286457672 9 47.51846681050895 2.820408681304734 36.005584465033635 13.655540043152683 10 28.114989211828913 19.495367432415282 41.674831831450696 10.714811524305116 11 19.8327198883107 15.539916233024496 51.05889072217287 13.568473156491942 12 16.243812666582052 14.265769767737021 52.44777255996954 17.042645005711385 13 15.906714050006347 15.219824850869399 57.21944409188984 11.65401700723442 14 13.70871938063206 20.36578245970301 49.85175783728899 16.073740322375937 15 11.197867749714431 15.959766467825867 58.43647671024242 14.405889072217287 16 13.412361974869908 17.939840081228585 49.01294580530524 19.63485213859627 17 13.628252316283792 17.703388754918137 53.32250285569234 15.345856073105724 18 13.265642848077167 16.831577611372 52.85048864069044 17.052290899860388 19 13.398146972966114 18.92524432034522 49.43749206752126 18.239116639167406 20 15.3751745145323 18.4121081355502 54.00748825993147 12.20522908998604 21 15.228582307399416 21.53357025003173 50.51643609595126 12.721411346617591 22 13.54905444853408 14.969285442315014 52.743241528112705 18.738418581038204 23 13.814697296611245 20.348775225282395 52.356644244193426 13.479883233912934 24 15.339637009772813 17.066632821424037 50.07374032237594 17.51998984642721 25 12.679908617844903 24.508820916359944 48.00025383931971 14.81101662647544 26 13.457164614798833 16.35892879807082 51.607183652747814 18.576722934382538 27 15.592714811524305 18.067648178702882 48.318695265896686 18.020941743876126 28 11.305749460591445 18.747810635867495 52.44612260439142 17.500317299149636 29 15.131361847950247 15.52950882091636 49.14379997461607 20.195329356517323 30 13.106993273258027 20.35270973473791 49.93349409823581 16.606802893768243 31 15.167914709988578 20.051021703261835 46.83005457545374 17.95100901129585 32 16.908364005584463 20.031349155984262 48.34801370732326 14.712273131108008 33 14.115369970808478 19.434953674324156 45.739560857976905 20.71011549689047 34 16.512247747176037 23.589161061048355 42.43343063840589 17.465160553369717 35 17.01764183271989 21.658713034649065 40.6142911536997 20.709353978931336 36 15.6021068663536 24.592207132884884 38.04188348775225 21.763802513009264 37 15.852265515928417 23.216651859373016 42.648178702881076 18.28290392181749 38 17.41794643990354 24.748952912806192 39.475060286838435 18.35804036045183 39 18.205863688285316 25.451707069425055 38.940728518847564 17.40170072344206 40 20.282777002157633 22.654143926894278 40.58687650717096 16.47620256377713 41 16.806574438380505 27.56200025383932 35.39751237466683 20.23391293311334 42 18.794009392054832 23.587257266150527 40.43533443330372 17.183398908490926 43 18.88463002919152 22.182891229851503 36.290772940728516 22.641705800228458 44 19.159284173118415 23.41388501078817 36.24939713161569 21.177433684477727 45 17.077801751491307 23.228074628759995 36.768752379743624 22.925371240005077 46 20.869145830689174 24.47582180479756 35.79642086559208 18.85861149892118 47 15.249524051275543 22.134661759106486 43.84731564919406 18.768498540423913 48 18.039472014215 24.559208021322505 35.7682447011042 21.633075263358297 49 17.231628379235943 21.761517959131872 41.17984515801498 19.82700850361721 50 17.456656936159412 21.175783728899606 39.409188983373525 21.958370351567456 51 17.297626602360705 21.414900368067013 37.27110039345094 24.016372636121336 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 66.0 1 1239.5 2 2413.0 3 29602.5 4 56792.0 5 42618.5 6 28445.0 7 26994.5 8 25544.0 9 24609.5 10 23675.0 11 22604.0 12 21533.0 13 20143.5 14 18754.0 15 17415.0 16 16076.0 17 14845.0 18 13614.0 19 12484.0 20 11354.0 21 10840.5 22 10327.0 23 9756.0 24 9185.0 25 9113.5 26 9611.5 27 10181.0 28 10886.0 29 11591.0 30 12771.0 31 13951.0 32 15179.5 33 16408.0 34 18224.0 35 20040.0 36 21036.0 37 22032.0 38 23794.5 39 25557.0 40 26352.0 41 27147.0 42 28206.0 43 29265.0 44 31087.5 45 32910.0 46 71225.0 47 109540.0 48 78281.5 49 47023.0 50 42468.5 51 37914.0 52 33792.0 53 29670.0 54 27734.5 55 25799.0 56 23926.5 57 22054.0 58 19990.5 59 17927.0 60 15903.0 61 13879.0 62 11938.0 63 9997.0 64 8352.5 65 6708.0 66 5432.5 67 4157.0 68 3422.5 69 2688.0 70 2120.0 71 1552.0 72 1344.0 73 1136.0 74 992.5 75 688.0 76 527.0 77 409.5 78 292.0 79 218.5 80 145.0 81 122.0 82 99.0 83 60.0 84 21.0 85 18.0 86 15.0 87 8.5 88 2.0 89 2.0 90 2.0 91 2.0 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 787900.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.49732162654552 #Duplication Level Percentage of deduplicated Percentage of total 1 81.7943061350907 38.85010465718528 2 6.189800367252352 5.879978776949891 3 2.9562347443388286 4.212396973662898 4 2.1035006167194714 3.996425813358463 5 1.6061487833437065 3.8143882671280402 6 1.2161025424498013 3.465696815375876 7 0.9354938324799243 3.1103416008664055 8 0.7442592137454354 2.828025539902946 9 0.5748793541590808 2.4574706622859166 >10 1.7832483143424587 12.172273722042414 >50 0.05355825816308166 1.7703042464674419 >100 0.03678742647433359 3.1500297822789833 >500 0.002434462046072678 0.7978499448505311 >1k 0.0021639662631757137 3.1439913044182526 >5k 0.0 0.0 >10k+ 0.0010819831315878568 10.35072189322676 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26879 3.4114735372509206 No Hit GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC 20421 2.591826373905318 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG 18743 2.378855184668105 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGC 14521 1.8430003807589794 No Hit GAACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCT 4759 0.6040106612514279 Illumina PCR Primer Index 10 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTC 4099 0.5202436857469221 No Hit GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC 3287 0.4171849219444092 Illumina PCR Primer Index 10 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCT 3256 0.4132504124888945 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCATTAGCT 3222 0.408935144053814 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTA 2876 0.3650209417438761 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT 1671 0.21208275161822568 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGT 1301 0.16512247747176037 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 826 0.10483563904048737 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 819 0.10394720142150018 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.058890722172864576 0.0 2 0.0 0.0 0.0 0.558446503363371 0.0 3 0.0 0.0 0.0 0.6658205356009645 0.0 4 0.0 0.0 0.0 1.415915725345856 0.0 5 0.0 0.0 0.0 4.492955958878031 0.0 6 0.0 0.0 0.0 4.828531539535474 0.0 7 0.0 0.0 0.0 5.40741210813555 0.0 8 0.0 0.0 0.0 6.112450818631806 0.0 9 0.0 0.0 0.0 6.24419342556162 0.0 10 0.0 0.0 0.0 9.153826627744637 0.0 11 0.0 0.0 0.0 9.336210178956721 0.0 12 0.0 0.0 0.0 11.65998223124762 0.0 13 0.0 0.0 0.0 11.861784490417566 0.0 14 0.0 0.0 0.0 12.019418707957863 0.0 15 0.0 0.0 0.0 12.532935651732453 0.0 16 0.0 0.0 0.0 12.800355375047594 0.0 17 0.0 0.0 0.0 12.934890214494224 0.0 18 0.0 0.0 0.0 13.04873714938444 0.0 19 0.0 0.0 0.0 13.666328214240385 0.0 20 0.0 0.0 0.0 13.812285823073994 0.0 21 0.0 0.0 0.0 13.924863561365656 0.0 22 0.0 0.0 0.0 14.149257519989847 0.0 23 0.0 0.0 0.0 14.27262342936921 0.0 24 0.0 0.0 0.0 14.382535854803908 0.0 25 0.0 0.0 0.0 14.467318187587257 0.0 26 0.0 0.0 0.0 14.579134407919787 0.0 27 0.0 0.0 0.0 14.73549942886153 0.0 28 0.0 0.0 0.0 14.83297372763041 0.0 29 0.0 0.0 0.0 14.947962939459321 0.0 30 0.0 0.0 0.0 15.073486483056225 0.0 31 0.0 0.0 0.0 15.183906587130346 0.0 32 0.0 0.0 0.0 15.30079959385709 0.0 33 0.0 0.0 0.0 15.417058002284554 0.0 34 0.0 0.0 0.0 15.563904048737148 0.0 35 0.0 0.0 0.0 15.713796167026272 0.0 36 0.0 0.0 0.0 15.851503997969285 0.0 37 0.0 0.0 0.0 16.002665312856962 0.0 38 0.0 0.0 0.0 16.153065109785505 0.0 39 0.0 0.0 0.0 16.369336210178957 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCAACGA 30 2.1646283E-6 45.000004 9 CCGGTGA 65 0.0 45.000004 18 TCGTTAG 25 3.8896855E-5 45.0 1 TACGCGG 20 7.0319354E-4 45.0 2 CGTTTTT 22425 0.0 44.458195 1 TCAAGCG 120 0.0 43.125004 17 TACGGCT 1845 0.0 42.317074 7 ACGGCTG 1865 0.0 41.86327 8 ACCGGTG 70 0.0 41.785713 17 GATACCT 2275 0.0 41.736263 5 ACACGAC 125 0.0 41.4 26 GACACGA 125 0.0 41.4 25 AGACACG 125 0.0 41.4 24 CGGCTGT 1890 0.0 41.309525 9 GCTACGA 60 3.6379788E-12 41.250004 10 CCGATGA 525 0.0 41.142853 18 CTCGTTG 55 6.002665E-11 40.90909 1 CGATGAA 540 0.0 40.833336 19 TGATACC 2340 0.0 40.576923 4 ATACCTG 2345 0.0 40.490406 6 >>END_MODULE