SRR2933249.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933249.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	521297
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38498	7.38504154061888	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCG	9515	1.825255084913207	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	6555	1.2574405761015313	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGC	6109	1.1718847413278803	No Hit
GAACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCT	2099	0.4026495452688199	Illumina PCR Primer Index 10 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGC	1726	0.3310972439895108	Illumina PCR Primer Index 10 (95% over 23bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCATTAGCT	1682	0.3226567580477156	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTC	1463	0.28064615756468964	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTA	950	0.18223776465239586	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCT	894	0.171495327999202	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCCATTAGCTCGTATGCCG	793	0.15212057617826305	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	668	0.12814192293452675	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	598	0.11471387711803445	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC	568	0.10895900033953773	No Hit
GAATCTTTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTC	539	0.10339595278699092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACCGT	20	7.0297346E-4	45.000004	12
TGTTACG	20	7.0297346E-4	45.000004	1
CGGGTAT	45	3.8380676E-10	45.0	6
TACGGAT	25	3.887862E-5	45.0	29
ATCCGGC	45	3.8380676E-10	45.0	6
CGTTTTT	16250	0.0	44.626156	1
CGACCAC	680	0.0	42.683823	12
GCGACCA	685	0.0	42.37226	11
CGGTGTC	80	0.0	42.187504	19
ACCGGTG	130	0.0	41.53846	17
TGATACC	1270	0.0	41.45669	4
TACGGCT	980	0.0	41.32653	7
ACGGCTG	980	0.0	41.32653	8
TAGGGAT	120	0.0	41.249996	5
CGGTAGG	60	3.6379788E-12	41.249996	31
GAATGAT	3685	0.0	41.092266	1
GTTTTTT	17900	0.0	40.663406	2
CACCGGT	155	0.0	40.645164	16
ACGGCGA	1160	0.0	40.53879	8
AATGATA	3475	0.0	40.532375	2