SRR2933248.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933248.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	273841
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9652	3.5246730767123986	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG	6875	2.5105809575629654	No Hit
GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC	6102	2.2283003640798857	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC	5807	2.1205736175371843	No Hit
GAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	1433	0.5232963654091243	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTATCGCGAT	1253	0.45756479124747573	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTC	1241	0.45318268630336583	No Hit
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	1013	0.36992269236527764	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT	938	0.3425345364645908	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCT	932	0.34034348399253583	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTA	827	0.3020000657315741	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTATCGCGATCGT	460	0.16798068952421297	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	351	0.12817656961521465	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATG	300	0.10955262360274759	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	20	7.0238643E-4	45.0	24
ACCGGGC	20	7.0238643E-4	45.0	30
GGCACTC	20	7.0238643E-4	45.0	9
TAACGTC	25	3.882998E-5	45.0	32
TCGATCA	20	7.0238643E-4	45.0	17
CCTCGAT	20	7.0238643E-4	45.0	15
GGGCGAA	20	7.0238643E-4	45.0	7
TTGCGCG	25	3.882998E-5	45.0	1
TAGGGCG	25	3.882998E-5	45.0	5
TAGGGAC	25	3.882998E-5	45.0	5
CTCGATC	20	7.0238643E-4	45.0	16
CACGACC	65	0.0	44.999996	27
AAACACG	60	0.0	44.999996	40
CGTTTTT	7505	0.0	44.430378	1
GATACCT	890	0.0	43.230335	5
TGATACC	905	0.0	42.762432	4
ATACCTG	915	0.0	42.049183	6
GCGAGAC	75	0.0	42.0	21
ACACGAC	70	0.0	41.785717	26
TACGGCT	700	0.0	41.785713	7