SRR2933246.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933246.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	620512
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21128	3.404930122221649	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC	20827	3.356421793615595	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCG	19171	3.089545407663349	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC	14530	2.341614666597906	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	4844	0.780645660357898	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTC	3799	0.6122363467588057	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	3576	0.576298282708473	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACTACT	3177	0.5119965447888196	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	3060	0.49314114795523695	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTA	2644	0.4260997369913877	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	2276	0.3667938734464442	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACTACTCGT	1290	0.2078928368830901	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTAT	674	0.10861997834046722	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	626	0.10088443092156155	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACCGGT	130	0.0	45.000004	16
CGACGAA	25	3.8887243E-5	45.0	19
ATTCGGC	25	3.8887243E-5	45.0	28
TACGCCA	20	7.030774E-4	45.0	28
GAGCGAC	25	3.8887243E-5	45.0	18
GCGATAG	20	7.030774E-4	45.0	9
GACGAAT	25	3.8887243E-5	45.0	20
ACCGGTG	105	0.0	44.999996	17
GCGATCG	30	2.1638807E-6	44.999996	9
CGTTTTT	18345	0.0	44.582993	1
CGATGAA	560	0.0	42.589283	19
GACACGA	90	0.0	42.5	25
TGATACC	2235	0.0	42.18121	4
GATACCT	2235	0.0	42.18121	5
ACGGCTG	1885	0.0	42.015915	8
ATACCTG	2265	0.0	41.821194	6
CCGATGA	565	0.0	41.81416	18
CGGCTGT	1940	0.0	41.52062	9
TACGGCT	1935	0.0	40.930237	7
CGCTTTT	530	0.0	40.75472	1