SRR2933245.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933245.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375480
Sequences flagged as poor quality	0
Sequence length	51
%GC	34

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	24011	6.394748055821882	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCG	8479	2.258176201129221	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC	5935	1.5806434430595504	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC	5139	1.3686481303930969	No Hit
GAACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	1956	0.5209332054969639	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	1701	0.45302013422818793	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCACTACT	1446	0.385107062959412	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTC	1154	0.30733993821242145	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTA	849	0.22611057845957178	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	754	0.20080963033983168	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTCACTACTCGTATGCCG	721	0.19202087994034303	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	681	0.18136784915308404	No Hit
GAATCTTTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTC	474	0.12623841482901885	No Hit
GAATCTGTCTCTTATCCACATCTGACGCCTCACTACTCGTATGCCGTCTTC	465	0.1238414829018856	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCACTACTCGT	421	0.11212314903590072	No Hit
GAATCTGTCTCTTATCCCCATCTGACGCCTCACTACTCGTATGCCGTCTTC	390	0.10386705017577502	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	388	0.10333439863641206	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACCGGT	105	0.0	45.000004	16
ACCGGTC	25	3.8857717E-5	45.0	17
CGACCGC	40	6.7939254E-9	45.0	12
TACGCGG	20	7.027212E-4	45.0	2
TTACGCG	20	7.027212E-4	45.0	1
CCGGTCT	25	3.8857717E-5	45.0	18
CGTTTTT	12335	0.0	44.689907	1
TACGGCT	715	0.0	42.797203	7
ACGGCTG	710	0.0	42.78169	8
CGACCAC	685	0.0	42.043793	12
CGGGATC	75	0.0	42.000004	6
GAATGAT	3190	0.0	41.896553	1
CGCTTTT	145	0.0	41.89655	1
AATGATA	2990	0.0	41.839466	2
TGATACC	1210	0.0	41.83884	4
GCGACCA	700	0.0	41.785717	11
ATGATAC	3020	0.0	41.57285	3
TGATCCG	60	3.6379788E-12	41.249996	4
ATACGGC	1815	0.0	41.157024	6
ACGGCGA	1060	0.0	40.96698	8