SRR2933244.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933244.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443233
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	14160	3.194707975263575	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	13919	3.140334767492493	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12847	2.89847551964768	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	12673	2.8592185148668987	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTACCAT	3139	0.7082053908440933	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	3127	0.7054980112040394	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTC	2837	0.6400696699027374	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTA	2623	0.5917880663217766	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	2536	0.572159563931386	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT	2289	0.516432666340277	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCTACCATCGT	1063	0.23982871311477258	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	741	0.1671806927733269	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATG	642	0.1448448107428824	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTAT	614	0.1385275915827567	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	461	0.10400850117206976	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	456	0.10288042632204732	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	20	7.028591E-4	45.0	1
ACCGGTG	55	1.8189894E-12	45.0	17
TTCGTAC	20	7.028591E-4	45.0	33
GCTTGCG	20	7.028591E-4	45.0	1
CTACGGC	25	3.8869133E-5	45.0	6
TGCTATA	40	6.7993824E-9	45.0	32
TGCTACG	25	3.8869133E-5	45.0	4
CGCCGAT	20	7.028591E-4	45.0	16
TCGACGT	25	3.8869133E-5	45.0	26
GTTATAC	20	7.028591E-4	45.0	33
CGGGTAT	30	2.1624728E-6	44.999996	6
CGTTTTT	11795	0.0	44.275116	1
CACCCGT	110	0.0	42.954544	16
CGGGCAC	100	0.0	42.75	6
TACGGCT	1795	0.0	42.618385	7
ACGGCTG	1805	0.0	42.506927	8
CGGCTGT	1810	0.0	42.26519	9
TGATACC	1850	0.0	42.2027	4
CGATGAA	400	0.0	42.1875	19
GATACCT	1875	0.0	41.640003	5