SRR2933243.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933243.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295143
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20064	6.798060601132333	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	5740	1.9448199686253782	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	5016	1.6995151502830832	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	3221	1.091335386575321	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTACCAT	1329	0.45029019831064937	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	1261	0.42725051923982615	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	1060	0.35914793845695137	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTC	841	0.28494661909650576	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTA	782	0.2649563093144679	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGCTACCATCGTATGCCG	524	0.17754105636928538	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCT	513	0.17381404946076986	No Hit
GAATCTTTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	389	0.13180051703750387	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	388	0.1314616982276388	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCTACCATCGT	355	0.1202806775020922	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	334	0.11316548249492618	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	321	0.10876083796668055	No Hit
GAATGATACGGCTGCCTCCTATACACATCTGACGCAGCTACCATCGTATGC	305	0.10333973700883978	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCTCG	30	2.159999E-6	45.000004	1
ACCGCCT	30	2.159999E-6	45.000004	14
GACCGCC	35	1.2078272E-7	45.0	13
GCGTTGG	20	7.024758E-4	45.0	2
GCCGATT	20	7.024758E-4	45.0	9
CGGGATC	55	1.8189894E-12	45.0	6
CGTGTCT	20	7.024758E-4	45.0	20
TTCGGGT	35	1.2078272E-7	45.0	4
GTCTTAT	70	0.0	45.0	23
CGCCACT	20	7.024758E-4	45.0	20
CGTTTTT	9675	0.0	44.255814	1
TACGGCT	785	0.0	43.28026	7
ACGGCTG	795	0.0	42.73585	8
CCGATGA	95	0.0	42.63158	18
CGATGAA	90	0.0	42.5	19
ACCGGTG	70	0.0	41.785713	17
CCTATAC	70	0.0	41.785713	18
CGGCTGT	755	0.0	41.721855	9
ATGATAC	2320	0.0	41.702587	3
GATACGG	1610	0.0	41.645966	5