SRR2933242.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933242.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	604801
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23444	3.8763163420695403	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTC	16686	2.7589240097155923	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCG	15172	2.5085937357907806	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGC	12940	2.1395467269399355	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	4033	0.6668309080176785	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTC	2930	0.4844568709377134	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGGCATT	2894	0.4785044998272159	No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC	2832	0.46825319402580357	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCT	2548	0.4212955997096566	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTA	2209	0.3652441050858051	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTT	1606	0.26554188898497194	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGT	1156	0.19113725010375313	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	764	0.12632254245611366	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTAT	653	0.10796939819874636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAC	25	3.8886054E-5	45.000004	10
GCAACGA	25	3.8886054E-5	45.000004	9
CGTCCAA	25	3.8886054E-5	45.000004	26
CGTTTTT	16090	0.0	44.356747	1
CCGATGA	495	0.0	42.727272	18
CGATGAA	505	0.0	42.32673	19
GATACCT	1700	0.0	42.088234	5
TGATACC	1690	0.0	42.071007	4
TGCCAGT	180	0.0	41.25	24
TAGCATA	180	0.0	41.25	30
ATACCTG	1745	0.0	41.1318	6
ACGGCTG	1530	0.0	40.882355	8
TACGGCT	1525	0.0	40.868855	7
TACCTGT	1800	0.0	40.500004	7
GAATCTG	1975	0.0	40.44304	1
GTTGATC	190	0.0	40.263157	16
CCGTTTG	45	1.925764E-8	40.0	1
AATCTGT	1995	0.0	39.924812	2
GATGAAT	550	0.0	39.68182	20
ACAACGA	40	3.4546065E-7	39.375	13