SRR2933240.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933240.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425902
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14126	3.316725443881456	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	13098	3.0753553634404156	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	11679	2.742180125944466	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	11577	2.7182309545388375	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCTGAAT	2835	0.6656460875976163	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	2810	0.6597761926452564	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTC	2486	0.5837023540626717	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTA	2400	0.5635099154265535	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	2215	0.5200726927790901	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	2161	0.5073937196819925	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGT	1069	0.2509967081629107	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT	720	0.16905297462796606	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATG	596	0.1399382956642608	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTAT	578	0.13571197129856163	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	490	0.11504994106625469	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	473	0.11105841249864992	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	30	2.162271E-6	45.000004	6
GATACCG	20	7.02828E-4	45.000004	27
CGACGAA	20	7.02828E-4	45.000004	19
GGCAACG	20	7.02828E-4	45.000004	8
ATCCGGC	20	7.02828E-4	45.000004	6
ACCGTCT	20	7.02828E-4	45.000004	40
TTCGAAA	20	7.02828E-4	45.000004	33
TTCTCCG	20	7.02828E-4	45.000004	1
TCAAGCG	65	0.0	44.999996	17
AACACGT	65	0.0	44.999996	41
CGTTTTT	11820	0.0	44.219543	1
TGATACC	1525	0.0	42.934425	4
GATACCT	1535	0.0	42.801304	5
TACGGCT	1480	0.0	42.56757	7
CACCGGT	90	0.0	42.5	16
ACGGCTG	1490	0.0	42.28188	8
ACCGAGG	70	0.0	41.785717	17
AGACACG	70	0.0	41.785717	24
CGATGAA	350	0.0	41.785713	19
CGGCTGT	1525	0.0	41.60656	9