SRR2933239.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933239.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	277782
Sequences flagged as poor quality	0
Sequence length	51
%GC	35

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22536	8.112836684882389	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	6031	2.1711269988696174	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	4618	1.6624547306880935	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	3255	1.1717821889107285	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCTGAAT	1302	0.4687128755642914	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	1082	0.3895140793859933	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	1042	0.3751142982626664	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTC	822	0.29591550208436834	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTA	758	0.2728758522870452	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	504	0.18143724215391926	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGGTCTGAATCGTATGCCG	480	0.1727973734799231	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	388	0.13967787689627117	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGT	379	0.1364379261435226	No Hit
GAATCTTTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	355	0.12779805746952647	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA	347	0.12491810124486108	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	296	0.10655838031261924	No Hit
GAATGACTCTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	285	0.10259844050370434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGCAC	45	3.8198777E-10	45.000004	6
ACCCGGT	45	3.8198777E-10	45.000004	39
CACCGGT	90	0.0	45.000004	16
GTTATAC	30	2.1595388E-6	45.000004	33
CTTGTCG	20	7.024041E-4	45.0	1
CATGGGT	20	7.024041E-4	45.0	4
CCGATGA	95	0.0	45.0	18
GACACGA	25	3.8831437E-5	45.0	25
ACTCTGA	20	7.024041E-4	45.0	42
GTCGTTT	20	7.024041E-4	45.0	9
CGGTGTA	25	3.8831437E-5	45.0	19
CACACCG	25	3.8831437E-5	45.0	17
TCATACT	25	3.8831437E-5	45.0	40
GACTGAT	25	3.8831437E-5	45.0	1
CCACCGG	100	0.0	45.0	15
TGCTACG	65	0.0	44.999996	4
CGTTTTT	9180	0.0	44.534313	1
TACGGCT	600	0.0	44.25	7
CGACCAC	530	0.0	43.301888	12
ACGGCTG	615	0.0	43.17073	8