SRR2933238.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933238.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	758227
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25909	3.4170505666508846	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	17448	2.3011578326807145	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	14884	1.9630005262276335	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	13155	1.7349685516342732	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	4788	0.6314731604123831	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC	3346	0.4412926471887706	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTCTGTT	3034	0.40014402019448003	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	2934	0.3869553576963099	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTA	2628	0.34659805045190956	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	2563	0.33802541982809897	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT	1659	0.2187999108446415	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGT	1084	0.1429651014801636	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	783	0.10326722736067168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	45	3.8380676E-10	45.0	6
AACCGAT	20	7.0317666E-4	45.0	8
CGATGCG	45	3.8380676E-10	45.0	10
TGCGTAG	20	7.0317666E-4	45.0	1
CGTTTTT	20965	0.0	44.227283	1
GCGACCT	160	0.0	42.1875	11
CCGATGA	465	0.0	41.612904	18
CGGCTGT	1715	0.0	41.58892	9
TACGGCT	1730	0.0	41.488438	7
ACGGCTG	1730	0.0	41.488438	8
GATACCT	1630	0.0	41.411045	5
TGATACC	1635	0.0	41.284405	4
CACCCGT	60	3.6379788E-12	41.250004	16
CGATGAA	465	0.0	40.64516	19
ACGGCGA	1960	0.0	40.408165	8
ATACGGC	3905	0.0	40.16005	6
AATCTGT	2025	0.0	40.0	2
ATGATAC	5645	0.0	39.977856	3
GAATCTG	2030	0.0	39.901478	1
GAATGAT	6025	0.0	39.697094	1