##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933234.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 549373 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.59057143325209 31.0 28.0 33.0 25.0 34.0 2 28.942476241096667 31.0 28.0 33.0 16.0 34.0 3 28.83744741732848 31.0 28.0 34.0 16.0 34.0 4 33.3242278015119 35.0 32.0 37.0 28.0 37.0 5 34.32594430377903 35.0 33.0 37.0 30.0 37.0 6 33.87349032442439 35.0 33.0 37.0 28.0 37.0 7 33.845653135483545 35.0 33.0 37.0 29.0 37.0 8 33.72514848745752 35.0 33.0 37.0 28.0 37.0 9 34.941007293769445 37.0 34.0 39.0 28.0 39.0 10 34.80027413069081 37.0 33.0 39.0 27.0 39.0 11 34.95615911229711 37.0 34.0 39.0 27.0 39.0 12 35.060427068676475 37.0 34.0 39.0 27.0 39.0 13 35.12312399772104 37.0 34.0 39.0 27.0 39.0 14 36.06457179366296 38.0 34.0 40.0 27.0 41.0 15 36.24439861442044 38.0 34.0 41.0 27.0 41.0 16 36.23031710695648 38.0 34.0 41.0 29.0 41.0 17 35.55221679987913 38.0 33.0 40.0 27.0 41.0 18 35.281824916768755 38.0 33.0 39.0 27.0 40.0 19 34.418808350610604 37.0 33.0 37.0 27.0 39.0 20 33.58719121616825 35.0 32.0 37.0 27.0 39.0 21 33.973631758386375 35.0 33.0 37.0 27.0 39.0 22 34.44255360201539 35.0 33.0 38.0 29.0 40.0 23 34.83525582800757 35.0 33.0 38.0 30.0 40.0 24 34.30464001689199 35.0 33.0 38.0 27.0 40.0 25 33.38409969183051 35.0 33.0 38.0 24.0 40.0 26 33.2492969257681 35.0 32.0 38.0 24.0 40.0 27 34.02270406445166 35.0 33.0 38.0 26.0 40.0 28 33.78950367054806 35.0 33.0 38.0 24.0 40.0 29 33.67167844069512 35.0 33.0 38.0 24.0 40.0 30 32.99599907530949 35.0 33.0 38.0 21.0 40.0 31 32.74038585806001 35.0 32.0 38.0 21.0 40.0 32 32.07392063315817 35.0 31.0 38.0 16.0 40.0 33 31.226587400545714 35.0 30.0 38.0 12.0 40.0 34 30.4014121553116 35.0 25.0 38.0 8.0 40.0 35 29.940621399304298 35.0 23.0 39.0 7.0 40.0 36 29.21061282589425 35.0 21.0 39.0 7.0 40.0 37 29.086256514244422 35.0 20.0 39.0 7.0 40.0 38 28.772462425346713 35.0 18.0 38.0 7.0 40.0 39 28.307350379432553 34.0 18.0 38.0 7.0 40.0 40 28.118709874711715 34.0 18.0 38.0 7.0 40.0 41 27.48633078072639 33.0 16.0 38.0 7.0 40.0 42 27.63436135376147 33.0 15.0 38.0 7.0 40.0 43 27.504891940448474 33.0 15.0 38.0 7.0 40.0 44 27.51566422084813 34.0 15.0 38.0 7.0 40.0 45 27.58118436836175 34.0 15.0 38.0 7.0 40.0 46 27.37459977101168 34.0 15.0 38.0 7.0 40.0 47 27.273042177172886 33.0 15.0 37.0 7.0 40.0 48 27.180028869274608 33.0 15.0 37.0 7.0 40.0 49 27.369752426857527 34.0 15.0 38.0 7.0 40.0 50 27.35570004350414 34.0 15.0 37.0 7.0 40.0 51 26.20016637148167 32.0 15.0 36.0 7.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 11.0 9 27.0 10 41.0 11 38.0 12 44.0 13 68.0 14 97.0 15 155.0 16 298.0 17 688.0 18 1185.0 19 2193.0 20 3519.0 21 5330.0 22 7851.0 23 11333.0 24 16700.0 25 24338.0 26 32183.0 27 34287.0 28 31743.0 29 28876.0 30 28312.0 31 30228.0 32 33958.0 33 38207.0 34 41363.0 35 48030.0 36 48691.0 37 44790.0 38 30574.0 39 4211.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.10953395962306 2.126424123500791 27.270542964434004 45.493498952442145 2 43.834698829392785 15.947998900564825 27.07613952633275 13.141162743709648 3 10.6576042142588 16.256350421298464 59.93960387569102 13.146441488751723 4 9.269294268193013 2.594594201025533 73.21218916837923 14.923922362402228 5 19.388648513851244 2.8170295955571167 61.892011438494436 15.90231045209721 6 11.928325563870084 12.81952334752527 64.5657868151511 10.686364273453556 7 45.26141619628194 1.0906979411074078 51.12919637477633 2.5186894878343127 8 44.081889717914784 9.654824681955612 42.975355541681154 3.2879300584484494 9 41.59305244342186 2.0923853192639608 41.86900339113863 14.44555884617555 10 27.971887952265583 13.303347634485133 47.17796469793747 11.546799715311819 11 23.386478767613262 12.692833466515463 51.14976527787132 12.770922487999956 12 17.66450116769481 12.255971807860961 54.263496749931285 15.816030274512945 13 16.138943850535064 12.870854592417174 59.95653226496388 11.033669292083886 14 13.602779896354573 17.591144814179074 53.92492896447405 14.881146324992308 15 11.022565724926416 12.085959812367918 62.368008620736724 14.523465841968935 16 14.108265240556053 15.115231363754681 51.50125688739708 19.27524650829218 17 14.16760561585662 15.361330098130049 56.00384438259616 14.467219903417169 18 15.449430532625374 13.693246664834275 54.515784357804264 16.341538444736088 19 14.10881131762937 16.745817504682613 51.18052761966824 17.96484355801978 20 16.127476231995384 16.88743349236311 55.90172796988567 11.083362305755834 21 14.809064151314317 20.519756158384194 53.38831722709343 11.282862463208057 22 13.850698887641002 11.880088755726984 56.135266931574726 18.133945425057295 23 14.168697770003257 18.546415641103586 55.169438614566054 12.115447974327097 24 16.339536162133925 14.619757432564032 52.42703955236242 16.613666852939623 25 14.10244041844066 22.60504247569502 49.18006527441283 14.112451831451493 26 14.006330853536669 13.281686577243512 53.93803481423368 18.77394775498614 27 17.0346922764679 14.370018184366543 50.99995813409105 17.595331405074514 28 11.202589133430292 17.696901740711684 53.86213010104246 17.23837902481556 29 17.52834595074749 17.78500217520701 49.28345586696106 15.403196007084441 30 17.91678877556778 17.751691473734603 51.89406832880393 12.437451421893686 31 18.48179652076094 17.69835794624053 47.58606629739722 16.23377923560131 32 22.553893256494224 17.493214992364024 46.56999888964328 13.38289286149847 33 17.10932280982138 16.235781518203478 42.74127050291878 23.91362516905636 34 17.313919686624573 25.04618901911816 44.160524816472595 13.479366477784675 35 18.56716656988967 20.70196387518134 43.89804376989768 16.8328257850313 36 17.195967038787856 27.05211213510675 37.07044212220112 18.68147870390427 37 22.800902119325123 21.531090898169367 39.431133310155396 16.236873672350114 38 19.72830845345512 23.765820307878254 36.31503550411105 20.190835734555577 39 23.39721828338852 22.872438215929797 35.69105143499954 18.03929206568215 40 21.569862370374953 19.903053116916922 41.02130974765779 17.50577476505034 41 18.67820224146436 25.25624666665453 34.759807999301024 21.305743092580087 42 19.3360430891216 20.936959042399245 42.716697034619465 17.01030083385969 43 21.610636125182708 19.623279629686934 35.96044945783648 22.80563478729388 44 23.41505680111691 20.411086820793887 35.419287078178215 20.754569299910987 45 19.282345510245317 20.13549992445934 36.46848316171344 24.1136714035819 46 22.916670458868566 22.093732309378144 34.72631527213751 20.26328195961578 47 16.195007763395726 20.934046631341545 43.50632448263748 19.36462112262525 48 18.92739541258853 24.140247154483383 35.02611158538917 21.906245847538923 49 18.290305493717383 19.970402622626157 41.07591745498959 20.663374428666863 50 17.997244131036656 19.929992919200615 38.48751212746167 23.58525082230106 51 18.17362702571841 19.887216881790696 36.28700354768072 25.652152544810175 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 76.0 1 1147.0 2 2218.0 3 26880.5 4 51543.0 5 36762.5 6 21982.0 7 20572.5 8 19163.0 9 18492.5 10 17822.0 11 16616.0 12 15410.0 13 14215.5 14 13021.0 15 12020.0 16 11019.0 17 10286.0 18 9553.0 19 8798.0 20 8043.0 21 7519.0 22 6995.0 23 6640.0 24 6285.0 25 6098.5 26 6045.0 27 6178.0 28 6324.0 29 6470.0 30 6818.0 31 7166.0 32 7430.0 33 7694.0 34 8411.0 35 9128.0 36 9327.0 37 9526.0 38 9720.5 39 9915.0 40 10243.0 41 10571.0 42 10936.0 43 11301.0 44 13221.0 45 15141.0 46 44591.0 47 74041.0 48 50718.5 49 27396.0 50 26163.5 51 24931.0 52 23249.5 53 21568.0 54 21612.0 55 21656.0 56 20924.5 57 20193.0 58 19288.0 59 18383.0 60 16486.0 61 14589.0 62 13228.5 63 11868.0 64 10605.0 65 9342.0 66 8104.5 67 6867.0 68 6064.5 69 5262.0 70 4444.0 71 3626.0 72 3162.0 73 2698.0 74 2357.0 75 1721.0 76 1426.0 77 1059.0 78 692.0 79 521.0 80 350.0 81 274.5 82 199.0 83 137.0 84 75.0 85 54.0 86 33.0 87 24.0 88 15.0 89 10.5 90 6.0 91 5.0 92 4.0 93 2.0 94 0.0 95 2.0 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 549373.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.79339184796633 #Duplication Level Percentage of deduplicated Percentage of total 1 81.95393543831496 44.085801625162105 2 9.651271014320727 10.383492070085486 3 4.002574745966355 6.459362151316272 4 1.832780788087555 3.943659804200735 5 0.8994847120458104 2.419316678816772 6 0.4594862357243901 1.4830393876241486 7 0.25682333684950975 0.9670778876393551 8 0.16621807960596435 0.7153147430768081 9 0.11491118456180764 0.5563316140962566 >10 0.5487489230490149 5.49012681084158 >50 0.060309443764632896 2.340652308620132 >100 0.04660275184918125 4.589507090888906 >500 0.003084005637078171 1.1332753472080084 >1k 0.0023986710510608 3.138811420341244 >5k 0.0 0.0 >10k+ 0.0013706691720347427 12.294231060082195 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 24897 4.531893631467145 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC 16359 2.977758280803753 Illumina PCR Primer Index 7 (95% over 24bp) GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 14638 2.6644920664102534 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 10802 1.9662415153274733 No Hit GAACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCT 3854 0.7015270135226885 Illumina PCR Primer Index 7 (96% over 25bp) GAATGATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTC 2748 0.5002065991594054 Illumina PCR Primer Index 7 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 2531 0.46070702418939413 Illumina PCR Primer Index 7 (96% over 27bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT 2153 0.39190131295131 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCT 2120 0.3858944651448106 Illumina PCR Primer Index 7 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTT 1917 0.34894324985028385 Illumina PCR Primer Index 7 (95% over 23bp) GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTA 1705 0.3103538033358028 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGT 980 0.17838517728392186 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 721 0.1312405232874568 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 709 0.1290562149941843 No Hit GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 709 0.1290562149941843 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 685 0.12468759840763925 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 653 0.1188627762922459 No Hit GCGCTCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 650 0.11831669921892776 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.04532439708540464 0.0 2 0.0 0.0 0.0 0.5759292866595191 0.0 3 0.0 0.0 0.0 0.6875110353075233 0.0 4 0.0 0.0 0.0 1.5379350641549547 0.0 5 0.0 0.0 0.0 5.02063261208687 0.0 6 0.0 0.0 0.0 5.5698041221538 0.0 7 0.0 0.0 0.0 6.161205592557334 0.0 8 0.0 0.0 0.0 6.896225333243534 0.0 9 0.0 0.0 0.0 7.094087259475803 0.0 10 0.0 0.0 0.0 10.414599916632234 0.0 11 0.0 0.0 0.0 10.689822761584571 0.0 12 0.0 0.0 0.0 13.136794127123101 0.0 13 0.0 0.0 0.0 13.342665183764037 0.0 14 0.0 0.0 0.0 13.505578177303944 0.0 15 0.0 0.0 0.0 13.933702602785358 0.0 16 0.0 0.0 0.0 14.197457829198013 0.0 17 0.0 0.0 0.0 14.320143145003486 0.0 18 0.0 0.0 0.0 14.400234449090144 0.0 19 0.0 0.0 0.0 14.963603963063347 0.0 20 0.0 0.0 0.0 15.089565741308729 0.0 21 0.0 0.0 0.0 15.168928942630963 0.0 22 0.0 0.0 0.0 15.338030809668476 0.0 23 0.0 0.0 0.0 15.426131244163802 0.0 24 0.0 0.0 0.0 15.508406856543733 0.0 25 0.0 0.0 0.0 15.582309287132786 0.0 26 0.0 0.0 0.0 15.680967211712261 0.0 27 0.0 0.0 0.0 15.83969361435673 0.0 28 0.0 0.0 0.0 15.917054533076799 0.0 29 0.0 0.0 0.0 16.009523584158668 0.0 30 0.0 0.0 0.0 16.115826587764598 0.0 31 0.0 0.0 0.0 16.205565253479875 0.0 32 1.820256911060427E-4 0.0 0.0 16.318967259038942 0.0 33 1.820256911060427E-4 0.0 0.0 16.42071962036722 0.0 34 1.820256911060427E-4 0.0 0.0 16.55414445194795 0.0 35 1.820256911060427E-4 0.0 0.0 16.684474846779874 0.0 36 1.820256911060427E-4 0.0 0.0 16.79278013298797 0.0 37 1.820256911060427E-4 0.0 0.0 16.92711509302423 0.0 38 1.820256911060427E-4 0.0 0.0 17.10477216754373 0.0 39 1.820256911060427E-4 0.0 0.0 17.444432107147602 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGACA 20 7.0300663E-4 45.000004 18 TCGATTG 25 3.8881375E-5 45.0 1 TACGGGA 35 1.2103737E-7 45.0 4 CGTTGAT 30 2.1634241E-6 44.999996 25 TCGGGTA 30 2.1634241E-6 44.999996 5 CGTTCAT 30 2.1634241E-6 44.999996 17 CGTTTTT 18240 0.0 44.407894 1 GATACCT 1615 0.0 43.049534 5 TCGTTTG 110 0.0 42.954544 1 TGATACC 1615 0.0 42.910217 4 ATACCTG 1650 0.0 42.40909 6 GTTGATC 75 0.0 42.0 16 TACCTGT 1720 0.0 41.337208 7 AATCTGT 1965 0.0 41.335876 2 ATGACTG 245 0.0 41.32653 3 ACGGCTG 1200 0.0 41.25 8 GAATCTG 1985 0.0 41.1461 1 TACGGCT 1210 0.0 40.909092 7 ACATACG 55 6.002665E-11 40.909092 17 TACGAAA 50 1.0786607E-9 40.5 20 >>END_MODULE