##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933233.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 434913 Sequences flagged as poor quality 0 Sequence length 51 %GC 35 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.877780153731894 31.0 28.0 31.0 16.0 33.0 2 29.246056107773278 31.0 30.0 33.0 16.0 34.0 3 29.362913962102766 31.0 30.0 33.0 16.0 34.0 4 32.32088026800763 35.0 32.0 37.0 19.0 37.0 5 33.668908494342546 35.0 33.0 37.0 28.0 37.0 6 33.158907643597686 35.0 33.0 37.0 26.0 37.0 7 32.26331243260146 35.0 32.0 37.0 25.0 37.0 8 33.214300331330634 35.0 33.0 37.0 28.0 37.0 9 33.19666462028038 35.0 31.0 38.0 25.0 39.0 10 31.754385359830586 35.0 27.0 39.0 15.0 39.0 11 32.42440212180367 37.0 29.0 39.0 15.0 39.0 12 33.248608342358125 37.0 31.0 39.0 22.0 39.0 13 33.399967349791794 37.0 32.0 39.0 22.0 39.0 14 33.95742826726265 37.0 32.0 40.0 21.0 41.0 15 34.33927015288115 37.0 32.0 40.0 23.0 41.0 16 34.49869973994799 37.0 32.0 40.0 25.0 41.0 17 32.673700257292836 36.0 29.0 40.0 18.0 41.0 18 33.21516717136531 36.0 30.0 39.0 23.0 39.0 19 32.776408155194254 36.0 31.0 37.0 21.0 39.0 20 32.240905652394844 34.0 30.0 35.0 24.0 39.0 21 32.47847730465633 35.0 31.0 36.0 23.0 39.0 22 32.38033813659283 34.0 30.0 37.0 23.0 39.0 23 33.57355149190758 35.0 32.0 38.0 26.0 39.0 24 31.74470526289166 34.0 30.0 36.0 21.0 39.0 25 31.09122514158004 34.0 28.0 36.0 18.0 39.0 26 29.84596689452833 33.0 24.0 36.0 18.0 39.0 27 31.75458310052815 34.0 30.0 37.0 22.0 39.0 28 31.92103478166898 35.0 30.0 37.0 21.0 39.0 29 31.93963620310269 35.0 30.0 37.0 21.0 39.0 30 31.127292125091685 34.0 28.0 37.0 18.0 39.0 31 31.334501383035228 34.0 30.0 36.0 19.0 39.0 32 31.094878745864115 35.0 30.0 36.0 17.0 39.0 33 30.79969327198773 35.0 29.0 37.0 15.0 40.0 34 29.735365463897377 34.0 25.0 37.0 10.0 39.0 35 29.042560236185167 34.0 23.0 37.0 8.0 39.0 36 28.191824571810916 33.0 21.0 37.0 7.0 39.0 37 28.253144881849934 34.0 20.0 37.0 7.0 39.0 38 28.15693483524291 33.0 20.0 37.0 7.0 39.0 39 27.619503210987023 33.0 18.0 36.0 7.0 39.0 40 27.495466909473848 33.0 18.0 36.0 7.0 39.0 41 26.959033185947533 33.0 18.0 36.0 7.0 39.0 42 27.303067510053737 33.0 18.0 36.0 7.0 39.0 43 27.272086601228292 33.0 18.0 37.0 7.0 39.0 44 27.118338610250785 33.0 17.0 36.0 7.0 39.0 45 27.279340925656395 33.0 18.0 37.0 7.0 39.0 46 26.998762970985002 33.0 17.0 36.0 7.0 39.0 47 27.02782165628528 33.0 17.0 36.0 7.0 39.0 48 26.83274815882717 33.0 17.0 36.0 7.0 39.0 49 26.642268683621783 33.0 15.0 36.0 7.0 39.0 50 26.833007980906526 33.0 17.0 36.0 7.0 39.0 51 25.444247470183694 30.0 15.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 14.0 10 24.0 11 29.0 12 42.0 13 80.0 14 159.0 15 291.0 16 603.0 17 999.0 18 1716.0 19 2803.0 20 4340.0 21 6144.0 22 8517.0 23 11531.0 24 15785.0 25 21442.0 26 27097.0 27 29045.0 28 28359.0 29 27505.0 30 29231.0 31 31323.0 32 33607.0 33 36239.0 34 38784.0 35 40350.0 36 25094.0 37 11596.0 38 2117.0 39 38.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.09396362031027 2.1802061561737633 30.89330509780117 48.832525125714795 2 48.433364833886316 9.059513052035694 29.91655802424853 12.59056408982946 3 11.299961141653618 9.045717189414894 66.38546100024602 13.26886066868546 4 10.165941234223856 2.7288216263942444 71.80240645830315 15.302830681078744 5 15.499421723425144 2.968869635996165 66.33993465359738 15.191773986981305 6 12.472379533377941 7.925493144605933 68.19087955522139 11.411247766794737 7 46.326506680646474 1.212656324368322 49.68947812551016 2.7713588694750446 8 47.49340672732247 5.708268090399689 43.73012533541191 3.068199846865925 9 44.210681216703115 2.134909740568803 43.61125098582935 10.043158056898736 10 26.796623692554604 13.808048966115061 48.311731311779596 11.083596029550739 11 21.116867051571234 13.469360538774422 53.28100102779176 12.132771381862579 12 17.318176278933947 12.3797173227749 55.94820113447977 14.353905263811384 13 15.208329022126266 12.99524272670626 59.709413146997214 12.08701510417026 14 13.146307422404021 13.954055178851862 57.57036464764217 15.329272751101945 15 11.694522812608499 11.997801859222418 61.5881797049065 14.719495623262583 16 14.166971325299544 12.94787693170818 54.82291860670985 18.06223313628243 17 14.171799877216824 13.622034751777942 57.551740233104084 14.654425137901145 18 14.931032183448185 12.62068505655154 56.65087040396585 15.797412356034426 19 14.378277954441462 15.767751251399705 53.59784600598281 16.256124788176027 20 15.813507529092025 15.923414567971065 56.47037453467705 11.79270336825986 21 15.508618965172344 17.356114901141147 54.492507696941686 12.642758436744819 22 14.402190782984183 12.884645894696181 56.19008859243113 16.523074729888506 23 14.448636853807542 16.729782738156825 55.315660833316095 13.505919574719542 24 14.624534102222745 14.516466511693144 54.8118819166132 16.047117469470905 25 14.621085136567544 17.75619491714435 52.17089394890473 15.451825997383384 26 13.900941107761783 14.245837673281784 54.99306757903305 16.860153639923386 27 14.765021969911224 14.00349035324306 53.96021733082249 17.271270346023226 28 12.36684118432882 16.307859273004027 55.116540549489216 16.208758993177945 29 16.527673350762107 15.621055245531865 52.25481877984792 15.596452623858104 30 16.553195696610587 16.005959812652186 53.6633763534316 13.77746813730562 31 16.813477638056344 16.606539698744346 51.01411086815064 15.565871795048663 32 19.30684987572227 16.460073623920184 49.83456461407224 14.398511886285304 33 16.52629376450003 16.14690754242803 47.34165223849367 19.985146454578274 34 16.473869486540988 22.191104887644194 46.957437464504395 14.377588161310422 35 17.498212286135388 20.884866628498113 45.50910182036407 16.107819265002426 36 17.408079317012827 23.986176545653958 41.411270759899104 17.194473377434107 37 20.645738343070914 21.144918638900194 42.04840968193639 16.160933336092505 38 18.79249413101011 21.449347340732512 41.66350511481607 18.094653413441307 39 20.39695295380915 21.514417826093954 40.53730286287143 17.55132635722547 40 19.922375279653632 19.66761168325619 43.68620850606903 16.72380453102115 41 17.72147532954867 22.149027506650757 40.65272824679879 19.47676891700179 42 17.93623092434579 20.239680119932032 44.6029435772212 17.22114537850099 43 19.17303000830051 19.147967524539393 41.23675309774599 20.44224936941411 44 21.143998914725472 20.07550935474451 40.058356498885985 18.722135231644028 45 18.19720265892259 20.088155562146913 40.593635968573025 21.121005810357474 46 19.73130258235555 21.419686236097792 39.41477950762567 19.43423167392099 47 16.330162584240988 20.621825514528194 44.22838590706647 18.819625994164348 48 18.26549217889555 21.954735774741156 39.303262951440864 20.47650909492243 49 17.236320827383867 20.182427290055713 41.82882553522199 20.75242634733843 50 17.068241234453787 19.579318162483073 41.160186060200544 22.192254542862596 51 17.62145532554787 19.13141248939443 40.54971913923014 22.697413045827556 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 118.0 1 596.0 2 1074.0 3 29671.0 4 58268.0 5 38279.5 6 18291.0 7 17124.5 8 15958.0 9 15457.0 10 14956.0 11 13813.5 12 12671.0 13 11574.0 14 10477.0 15 9435.5 16 8394.0 17 7687.5 18 6981.0 19 6485.0 20 5989.0 21 5396.0 22 4803.0 23 4597.0 24 4391.0 25 4232.5 26 4132.5 27 4191.0 28 4314.5 29 4438.0 30 4665.0 31 4892.0 32 5379.0 33 5866.0 34 6469.0 35 7072.0 36 7289.5 37 7507.0 38 7720.0 39 7933.0 40 8012.5 41 8092.0 42 8743.5 43 9395.0 44 10525.0 45 11655.0 46 22484.5 47 33314.0 48 28279.5 49 23245.0 50 22504.5 51 21764.0 52 20088.5 53 18413.0 54 17539.5 55 16666.0 56 15851.0 57 15036.0 58 14494.5 59 13953.0 60 12930.0 61 11907.0 62 11111.0 63 10315.0 64 9370.5 65 8426.0 66 7630.0 67 6834.0 68 6117.0 69 5400.0 70 4695.5 71 3991.0 72 3436.5 73 2882.0 74 2551.0 75 1860.0 76 1500.0 77 1153.0 78 806.0 79 608.0 80 410.0 81 305.0 82 200.0 83 136.5 84 73.0 85 56.5 86 40.0 87 28.5 88 17.0 89 11.5 90 6.0 91 6.0 92 6.0 93 3.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 434913.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.69257117981824 #Duplication Level Percentage of deduplicated Percentage of total 1 81.21841691309257 44.4204404813147 2 10.131353487126836 11.082195434851686 3 4.048462942806367 6.64262543004881 4 1.9164945864192726 4.192720663338896 5 0.9499232747915118 2.5976873160950404 6 0.505833316760065 1.6599194809214044 7 0.282485154462864 1.08148875923915 8 0.17525875149284867 0.7668281392726963 9 0.10959362382661474 0.5394561364792215 >10 0.5471798772292839 5.57164406616023 >50 0.06626282958658364 2.591571152325544 >100 0.043177714762495184 4.286239837976205 >500 0.0029925148845293694 1.0514521356850859 >1k 0.001710008505445354 2.496643518978285 >5k 4.275021263613385E-4 1.479795545197 >10k+ 4.275021263613385E-4 9.539291902116037 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 40799 9.380956651100334 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 6329 1.4552335754507224 No Hit GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC 4455 1.0243427995944017 Illumina PCR Primer Index 7 (95% over 24bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 3906 0.8981106566140814 No Hit GAACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCT 1274 0.2929321496483205 Illumina PCR Primer Index 7 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 1043 0.2398180785582404 Illumina PCR Primer Index 7 (96% over 27bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT 928 0.21337600853504035 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTC 772 0.1775067657209603 Illumina PCR Primer Index 7 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 645 0.14830552317360024 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTT 564 0.1296811086355202 Illumina PCR Primer Index 7 (95% over 23bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 552 0.12692193611136018 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTA 523 0.1202539358446402 No Hit GAATCTTTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC 513 0.11795462540784019 Illumina PCR Primer Index 7 (95% over 24bp) GAATGATACCTGTCTCTTCTACACATCTGACGCAGAGCATCTCGTATGCCG 499 0.11473559079632019 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC 482 0.11082676305376017 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCT 461 0.10599821113648016 Illumina PCR Primer Index 7 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.05656303674528009 0.0 2 0.0 0.0 0.0 0.39387187782384064 0.0 3 0.0 0.0 0.0 0.5270019521145608 0.0 4 0.0 0.0 0.0 1.0418175589140817 0.0 5 0.0 0.0 0.0 2.431520786916004 0.0 6 0.0 0.0 0.0 2.9058685300278446 0.0 7 0.0 0.0 0.0 3.3880339286248056 0.0 8 0.0 0.0 0.0 3.9789567108824064 0.0 9 0.0 0.0 0.0 4.388463899676487 0.0 10 0.0 0.0 0.0 6.70823819936401 0.0 11 0.0 0.0 0.0 7.315716016766571 0.0 12 0.0 0.0 0.0 8.693002968409774 0.0 13 0.0 0.0 0.0 8.889364079712495 0.0 14 0.0 0.0 0.0 9.026173050702095 0.0 15 0.0 0.0 0.0 9.274728508920175 0.0 16 0.0 0.0 0.0 9.432921066972016 0.0 17 0.0 0.0 0.0 9.550415830292495 0.0 18 0.0 0.0 0.0 9.653884799948495 0.0 19 0.0 0.0 0.0 10.030971711583696 0.0 20 0.0 0.0 0.0 10.151225647428337 0.0 21 0.0 0.0 0.0 10.272399307447696 0.0 22 0.0 0.0 0.0 10.449906073168657 0.0 23 0.0 0.0 0.0 10.583496009546737 0.0 24 0.0 0.0 0.0 10.693862910513138 0.0 25 0.0 0.0 0.0 10.783076155460977 0.0 26 0.0 0.0 0.0 10.886085263029617 0.0 27 0.0 0.0 0.0 11.022664302975537 0.0 28 0.0 0.0 0.0 11.120384996539538 0.0 29 0.0 0.0 0.0 11.232131483768018 0.0 30 0.0 0.0 0.0 11.353765005874738 0.0 31 0.0 0.0 0.0 11.447346940652498 0.0 32 0.0 0.0 0.0 11.560702945186739 0.0 33 0.0 0.0 0.0 11.674058949720978 0.0 34 0.0 0.0 0.0 11.798221713308179 0.0 35 0.0 0.0 0.0 11.94261840873922 0.0 36 0.0 0.0 0.0 12.064711792933299 0.0 37 0.0 0.0 0.0 12.20795883314594 0.0 38 0.0 0.0 0.0 12.398341737312979 0.0 39 0.0 0.0 0.0 12.7591035448469 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCCTAA 20 7.028444E-4 45.000004 29 CTACGGC 40 6.7975634E-9 45.000004 6 GGCGATA 20 7.028444E-4 45.000004 8 TATACGG 20 7.028444E-4 45.000004 27 CATCGAC 25 3.8867933E-5 45.0 22 CGATGAA 125 0.0 44.999996 19 CGTTTTT 16525 0.0 44.564297 1 TGATACC 785 0.0 44.14013 4 GATACCT 785 0.0 44.14013 5 ATACCTG 785 0.0 43.853504 6 GAATGCT 160 0.0 43.593754 1 CCGATGA 145 0.0 43.44828 18 ATGATCC 85 0.0 42.35294 3 ACCACCG 315 0.0 42.142857 14 ATGATAC 2215 0.0 41.851017 3 CGACCAC 525 0.0 41.57143 12 GAATGAT 2405 0.0 41.44491 1 GGACTAA 220 0.0 40.909092 8 AATGATA 2255 0.0 40.909092 2 GTTTTTT 18185 0.0 40.855103 2 >>END_MODULE