SRR2933232.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933232.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554571
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	16099	2.9029646339242405	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13865	2.500130731682688	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG	12018	2.16708050006221	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC	9423	1.6991512358201204	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT	4249	0.7661778203331945	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC	2918	0.5261724828741495	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	2213	0.399047191432657	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTCTGGT	2110	0.38047427651283605	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT	2071	0.3734418135820301	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTA	1966	0.3545082595375525	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT	1595	0.28760970191373153	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGT	897	0.16174664740853742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	20	7.0301257E-4	45.0	24
TCTTACG	25	3.8881866E-5	44.999996	1
CGTTTTT	9735	0.0	43.936825	1
GAATCTG	2010	0.0	41.97761	1
ACGGCTG	1175	0.0	40.97872	8
CGACCAC	1160	0.0	40.926723	12
TACGAAT	55	6.002665E-11	40.909092	12
CTCGTCC	105	0.0	40.714287	37
CACCGGT	100	0.0	40.499996	16
AATCTGT	2085	0.0	40.467625	2
TACGGCT	1195	0.0	40.29289	7
GATACCT	1325	0.0	40.245285	5
TGATACC	1320	0.0	40.227272	4
GCGACCA	1200	0.0	39.937504	11
TTACGGG	120	0.0	39.375004	3
ATACCTG	1360	0.0	39.375004	6
AGGGTAC	40	3.4539153E-7	39.375	6
TATACGG	40	3.4539153E-7	39.375	27
GAATGAT	4675	0.0	39.272724	1
ATGATAC	4515	0.0	39.269104	3