SRR2933231.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933231.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	262144
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13028	4.96978759765625	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG	4236	1.61590576171875	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	3878	1.479339599609375	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC	3277	1.2500762939453125	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT	1544	0.5889892578125	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	918	0.350189208984375	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTCTGGT	903	0.3444671630859375	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC	738	0.281524658203125	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTA	562	0.214385986328125	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCTTTCTGGTCGTATGCCG	519	0.1979827880859375	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT	441	0.1682281494140625	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT	434	0.165557861328125	No Hit
GAATCTGTCTCTTATCCCCATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	370	0.141143798828125	No Hit
GAATCTGTCTCTTATCCACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	348	0.13275146484375	No Hit
GAATCTTTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC	318	0.121307373046875	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	307	0.1171112060546875	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGT	289	0.1102447509765625	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC	263	0.1003265380859375	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATAG	30	2.1590677E-6	45.000004	26
AACGAAT	30	2.1590677E-6	45.000004	24
CGTAACC	30	2.1590677E-6	45.000004	35
CACCGGT	75	0.0	45.000004	16
CGTTTTT	5145	0.0	44.0379	1
GATACCT	535	0.0	42.056072	5
GAATGAT	1790	0.0	41.606148	1
ACACGCG	125	0.0	41.4	36
GCGAGAC	120	0.0	41.250004	21
TCTTGCG	60	3.6379788E-12	41.250004	1
TCAAGCG	120	0.0	41.250004	17
TTACACG	120	0.0	41.250004	34
TACACGC	120	0.0	41.250004	35
AATGATA	1740	0.0	40.99138	2
TGATACC	550	0.0	40.909092	4
ACACGAC	110	0.0	40.909092	26
CACGACC	110	0.0	40.909092	27
ACGTGAG	110	0.0	40.909092	44
ATGATAC	1770	0.0	40.805088	3
TACGGCT	555	0.0	40.54054	7