##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933231.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 262144 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 28.65245819091797 31.0 28.0 31.0 16.0 33.0 2 28.87145233154297 31.0 30.0 33.0 16.0 34.0 3 29.058490753173828 31.0 30.0 33.0 16.0 34.0 4 32.2707633972168 35.0 32.0 37.0 19.0 37.0 5 33.7367057800293 35.0 33.0 37.0 28.0 37.0 6 32.83861541748047 35.0 33.0 37.0 18.0 37.0 7 32.19243621826172 35.0 32.0 35.0 26.0 37.0 8 32.97736358642578 35.0 32.0 35.0 28.0 37.0 9 32.5994873046875 35.0 31.0 37.0 25.0 39.0 10 30.59168243408203 34.0 27.0 37.0 15.0 39.0 11 31.441810607910156 35.0 27.0 39.0 15.0 39.0 12 32.34111022949219 35.0 30.0 39.0 21.0 39.0 13 32.57926559448242 35.0 30.0 38.0 21.0 39.0 14 32.948272705078125 36.0 31.0 39.0 18.0 41.0 15 33.441551208496094 36.0 31.0 39.0 22.0 41.0 16 33.525306701660156 36.0 31.0 39.0 23.0 41.0 17 31.44550323486328 34.0 27.0 38.0 17.0 40.0 18 32.3422737121582 34.0 29.0 38.0 19.0 39.0 19 32.292972564697266 35.0 30.0 37.0 18.0 39.0 20 32.277896881103516 34.0 30.0 37.0 23.0 39.0 21 32.79261779785156 35.0 31.0 37.0 23.0 39.0 22 33.62342071533203 35.0 31.0 38.0 26.0 39.0 23 34.52060317993164 35.0 33.0 39.0 28.0 40.0 24 32.632598876953125 35.0 31.0 38.0 23.0 39.0 25 31.75323486328125 35.0 30.0 37.0 18.0 39.0 26 31.645294189453125 34.0 28.0 37.0 21.0 39.0 27 33.03816223144531 35.0 31.0 38.0 24.0 40.0 28 32.998470306396484 35.0 31.0 38.0 23.0 40.0 29 33.479583740234375 35.0 32.0 38.0 24.0 40.0 30 32.41455841064453 35.0 30.0 38.0 21.0 40.0 31 32.530189514160156 35.0 30.0 38.0 22.0 40.0 32 32.56645584106445 35.0 31.0 38.0 21.0 40.0 33 32.86322784423828 35.0 31.0 38.0 21.0 40.0 34 32.3804931640625 35.0 31.0 38.0 18.0 40.0 35 31.976821899414062 35.0 31.0 38.0 15.0 40.0 36 31.312053680419922 35.0 30.0 38.0 12.0 40.0 37 31.514076232910156 35.0 30.0 38.0 10.0 40.0 38 31.37884521484375 35.0 30.0 38.0 10.0 40.0 39 30.896820068359375 35.0 29.0 38.0 10.0 40.0 40 30.57569122314453 35.0 27.0 38.0 10.0 40.0 41 30.10213851928711 34.0 25.0 38.0 10.0 40.0 42 30.663841247558594 35.0 27.0 38.0 10.0 40.0 43 30.727928161621094 35.0 28.0 38.0 10.0 40.0 44 30.646446228027344 35.0 28.0 38.0 10.0 40.0 45 30.93633270263672 35.0 29.0 38.0 9.0 40.0 46 30.71524429321289 35.0 29.0 38.0 8.0 40.0 47 30.721736907958984 35.0 29.0 38.0 8.0 40.0 48 30.529388427734375 35.0 28.0 38.0 8.0 40.0 49 30.427959442138672 35.0 28.0 38.0 8.0 40.0 50 30.555267333984375 35.0 28.0 38.0 8.0 40.0 51 28.807697296142578 33.0 24.0 37.0 8.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 8.0 10 9.0 11 15.0 12 15.0 13 24.0 14 48.0 15 86.0 16 209.0 17 390.0 18 630.0 19 1108.0 20 1661.0 21 2338.0 22 3136.0 23 4408.0 24 6060.0 25 8601.0 26 11128.0 27 12662.0 28 13115.0 29 14176.0 30 16306.0 31 19152.0 32 22582.0 33 25696.0 34 29079.0 35 30927.0 36 23444.0 37 12516.0 38 2564.0 39 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.998641967773438 2.74810791015625 40.12413024902344 33.129119873046875 2 32.3577880859375 12.207794189453125 39.13154602050781 16.302871704101562 3 13.981246948242188 12.247085571289062 57.44056701660156 16.331100463867188 4 12.926864624023438 3.32183837890625 64.56527709960938 19.186019897460938 5 19.98748779296875 3.8089752197265625 56.80656433105469 19.39697265625 6 16.437911987304688 10.379791259765625 59.12666320800781 14.055633544921875 7 59.81712341308594 1.6448974609375 34.77821350097656 3.759765625 8 61.084747314453125 7.2826385498046875 27.206039428710938 4.42657470703125 9 56.43653869628906 2.7679443359375 27.334213256835938 13.4613037109375 10 33.8623046875 17.209243774414062 33.95576477050781 14.972686767578125 11 26.282119750976562 17.539596557617188 40.54450988769531 15.633773803710938 12 21.652603149414062 15.4937744140625 43.92242431640625 18.931198120117188 13 19.480133056640625 16.74957275390625 48.60801696777344 15.162277221679688 14 16.802597045898438 19.017791748046875 45.20301818847656 18.976593017578125 15 14.48211669921875 16.1041259765625 51.25083923339844 18.162918090820312 16 17.511749267578125 16.71295166015625 42.487335205078125 23.2879638671875 17 17.798233032226562 17.891311645507812 44.948577880859375 19.36187744140625 18 18.032073974609375 16.657638549804688 44.32487487792969 20.98541259765625 19 18.17169189453125 19.999313354492188 40.850067138671875 20.978927612304688 20 18.978500366210938 21.045684814453125 44.77691650390625 15.198898315429688 21 18.808746337890625 22.055435180664062 42.53807067871094 16.597747802734375 22 17.1661376953125 16.960525512695312 44.683074951171875 21.190261840820312 23 17.546463012695312 21.350860595703125 43.32122802734375 17.781448364257812 24 18.550491333007812 19.048690795898438 41.85829162597656 20.542526245117188 25 17.426681518554688 22.971725463867188 39.369964599609375 20.23162841796875 26 16.961288452148438 18.43414306640625 42.36640930175781 22.2381591796875 27 17.885208129882812 18.474960327148438 41.814422607421875 21.825408935546875 28 14.617156982421875 19.377899169921875 43.82896423339844 22.175979614257812 29 18.434524536132812 17.641067504882812 41.21818542480469 22.706222534179688 30 17.502212524414062 19.04296875 45.2239990234375 18.230819702148438 31 18.814468383789062 17.447280883789062 43.72978210449219 20.008468627929688 32 20.886993408203125 18.969345092773438 41.15409851074219 18.98956298828125 33 18.51043701171875 17.333602905273438 39.6148681640625 24.541091918945312 34 19.017410278320312 18.799972534179688 41.529083251953125 20.653533935546875 35 19.633102416992188 20.691299438476562 40.097808837890625 19.577789306640625 36 21.2188720703125 20.2484130859375 37.9791259765625 20.5535888671875 37 18.67828369140625 21.068572998046875 41.88385009765625 18.369293212890625 38 20.943450927734375 20.04547119140625 37.282562255859375 21.728515625 39 21.112442016601562 19.524383544921875 39.37492370605469 19.988250732421875 40 23.101806640625 19.597625732421875 37.155914306640625 20.1446533203125 41 21.4447021484375 21.445465087890625 37.044525146484375 20.0653076171875 42 21.457672119140625 20.0775146484375 39.37721252441406 19.087600708007812 43 22.4273681640625 18.925857543945312 35.840606689453125 22.806167602539062 44 21.210098266601562 20.03326416015625 36.38801574707031 22.368621826171875 45 19.573593139648438 19.718551635742188 35.7452392578125 24.962615966796875 46 22.000885009765625 21.7987060546875 34.378814697265625 21.82159423828125 47 17.014312744140625 20.9747314453125 40.659332275390625 21.35162353515625 48 19.461822509765625 22.501754760742188 34.987640380859375 23.048782348632812 49 19.469070434570312 20.370864868164062 37.64915466308594 22.510910034179688 50 19.852447509765625 19.410324096679688 36.516571044921875 24.220657348632812 51 18.956756591796875 19.633865356445312 35.15892028808594 26.250457763671875 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 60.0 1 293.0 2 526.0 3 9187.0 4 17848.0 5 11848.0 6 5848.0 7 5626.5 8 5405.0 9 5374.0 10 5343.0 11 4893.0 12 4443.0 13 3995.0 14 3547.0 15 3206.0 16 2865.0 17 2634.0 18 2403.0 19 2242.0 20 2081.0 21 1934.5 22 1788.0 23 1811.0 24 1834.0 25 1849.0 26 2041.5 27 2219.0 28 2455.5 29 2692.0 30 3059.0 31 3426.0 32 3780.0 33 4134.0 34 4600.0 35 5066.0 36 5354.0 37 5642.0 38 6064.5 39 6487.0 40 7067.0 41 7647.0 42 8302.0 43 8957.0 44 10006.5 45 11056.0 46 20530.0 47 30004.0 48 25818.0 49 21632.0 50 20454.5 51 19277.0 52 16852.0 53 14427.0 54 13437.5 55 12448.0 56 11738.0 57 11028.0 58 10240.0 59 9452.0 60 8506.5 61 7561.0 62 6886.0 63 6211.0 64 5517.0 65 4823.0 66 4216.5 67 3610.0 68 3097.5 69 2585.0 70 2293.0 71 2001.0 72 1694.0 73 1387.0 74 1218.5 75 905.0 76 760.0 77 561.0 78 362.0 79 269.0 80 176.0 81 137.5 82 99.0 83 71.5 84 44.0 85 29.0 86 14.0 87 10.5 88 7.0 89 5.5 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 262144.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.683237557846006 #Duplication Level Percentage of deduplicated Percentage of total 1 77.554963883397 41.63401549942567 2 10.340986041302555 11.102752204752292 3 4.968661584398051 8.002015205393521 4 2.802892987180722 6.018734803201733 5 1.6317530408324759 4.37988930633737 6 0.935207312099778 3.0122973780772204 7 0.5049235373339738 1.897415114227335 8 0.3283333266810111 1.4100796779499662 9 0.19438376621489742 0.9391634909192824 >10 0.6651852897552003 5.939170224684161 >50 0.03383498859214559 1.210012742075433 >100 0.03167530846924268 3.0140176861853405 >500 0.0035994668715048504 1.4067219358526273 >1k 0.0028795734972038804 4.998886879190586 >5k 0.0 0.0 >10k+ 7.198933743009701E-4 5.0348278517274805 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13028 4.96978759765625 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCG 4236 1.61590576171875 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 3878 1.479339599609375 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGC 3277 1.2500762939453125 No Hit GAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT 1544 0.5889892578125 No Hit GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 918 0.350189208984375 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTCTGGT 903 0.3444671630859375 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTC 738 0.281524658203125 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTA 562 0.214385986328125 No Hit GAATGATACCTGTCTCTTCTACACATCTGACGCCTTTCTGGTCGTATGCCG 519 0.1979827880859375 No Hit GAATGCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTT 441 0.1682281494140625 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCT 434 0.165557861328125 No Hit GAATCTGTCTCTTATCCCCATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 370 0.141143798828125 No Hit GAATCTGTCTCTTATCCACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 348 0.13275146484375 No Hit GAATCTTTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTC 318 0.121307373046875 No Hit CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT 307 0.1171112060546875 Illumina Single End Adapter 2 (95% over 21bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGT 289 0.1102447509765625 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC 263 0.1003265380859375 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.144195556640625 0.0 2 0.0 0.0 0.0 0.6855010986328125 0.0 3 0.0 0.0 0.0 0.9063720703125 0.0 4 0.0 0.0 0.0 1.9321441650390625 0.0 5 0.0 0.0 0.0 3.995513916015625 0.0 6 0.0 0.0 0.0 4.6875 0.0 7 0.0 0.0 0.0 5.3436279296875 0.0 8 0.0 0.0 0.0 6.2503814697265625 0.0 9 0.0 0.0 0.0 6.7596435546875 0.0 10 0.0 0.0 0.0 9.412765502929688 0.0 11 0.0 0.0 0.0 10.2630615234375 0.0 12 0.0 0.0 0.0 12.266921997070312 0.0 13 0.0 0.0 0.0 12.604904174804688 0.0 14 0.0 0.0 0.0 12.803268432617188 0.0 15 0.0 0.0 0.0 13.232803344726562 0.0 16 0.0 0.0 0.0 13.536453247070312 0.0 17 0.0 0.0 0.0 13.797760009765625 0.0 18 3.814697265625E-4 0.0 0.0 14.059066772460938 0.0 19 3.814697265625E-4 0.0 0.0 14.714431762695312 0.0 20 3.814697265625E-4 0.0 0.0 15.010833740234375 0.0 21 3.814697265625E-4 0.0 0.0 15.318679809570312 0.0 22 3.814697265625E-4 0.0 0.0 15.724563598632812 0.0 23 3.814697265625E-4 0.0 0.0 16.026687622070312 0.0 24 3.814697265625E-4 0.0 0.0 16.271209716796875 0.0 25 3.814697265625E-4 0.0 0.0 16.480255126953125 0.0 26 3.814697265625E-4 0.0 0.0 16.686248779296875 0.0 27 3.814697265625E-4 0.0 0.0 16.920089721679688 0.0 28 3.814697265625E-4 0.0 0.0 17.121124267578125 0.0 29 3.814697265625E-4 0.0 0.0 17.370986938476562 0.0 30 3.814697265625E-4 0.0 0.0 17.63916015625 0.0 31 3.814697265625E-4 0.0 0.0 17.850112915039062 0.0 32 3.814697265625E-4 0.0 0.0 18.085098266601562 0.0 33 3.814697265625E-4 0.0 0.0 18.310928344726562 0.0 34 3.814697265625E-4 0.0 0.0 18.570709228515625 0.0 35 3.814697265625E-4 0.0 0.0 18.852615356445312 0.0 36 3.814697265625E-4 0.0 0.0 19.08111572265625 0.0 37 3.814697265625E-4 0.0 0.0 19.310760498046875 0.0 38 3.814697265625E-4 0.0 0.0 19.613265991210938 0.0 39 3.814697265625E-4 0.0 0.0 20.223236083984375 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAATAG 30 2.1590677E-6 45.000004 26 AACGAAT 30 2.1590677E-6 45.000004 24 CGTAACC 30 2.1590677E-6 45.000004 35 CACCGGT 75 0.0 45.000004 16 CGTTTTT 5145 0.0 44.0379 1 GATACCT 535 0.0 42.056072 5 GAATGAT 1790 0.0 41.606148 1 ACACGCG 125 0.0 41.4 36 GCGAGAC 120 0.0 41.250004 21 TCTTGCG 60 3.6379788E-12 41.250004 1 TCAAGCG 120 0.0 41.250004 17 TTACACG 120 0.0 41.250004 34 TACACGC 120 0.0 41.250004 35 AATGATA 1740 0.0 40.99138 2 TGATACC 550 0.0 40.909092 4 ACACGAC 110 0.0 40.909092 26 CACGACC 110 0.0 40.909092 27 ACGTGAG 110 0.0 40.909092 44 ATGATAC 1770 0.0 40.805088 3 TACGGCT 555 0.0 40.54054 7 >>END_MODULE