SRR2933230.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933230.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1680623
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5384	0.3203573912769253	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	3126	0.18600245266189977	No Hit
CTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGCT	2873	0.1709485113556104	No Hit
TCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	2652	0.15779862586671728	No Hit
GCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	2465	0.14667179968380772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAAT	20	7.034219E-4	45.0	35
CGCGTAG	20	7.034219E-4	45.0	29
TATACGG	20	7.034219E-4	45.0	2
TACGGGA	370	0.0	40.135136	4
CCGTTAG	45	1.9292202E-8	40.0	1
GTTACCG	155	0.0	39.19355	38
CATCGAA	35	6.250015E-6	38.571426	12
ACCGGTA	135	0.0	38.333336	41
CGTTTTT	3125	0.0	38.016	1
TTTGGGC	4510	0.0	37.865856	4
ACACGAC	1585	0.0	37.76025	26
CGACCAA	1555	0.0	37.62058	29
ATTACGG	30	1.1401462E-4	37.500004	2
CACGACC	1590	0.0	37.5	27
TTTGGGA	7535	0.0	37.445255	4
TCAAGCG	1650	0.0	37.363636	17
TGGGCGA	2940	0.0	37.27041	6
ACGACCA	1580	0.0	37.025314	28
CGTTCAT	305	0.0	36.885246	17
GCGAGAC	1680	0.0	36.69643	21