##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933228.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1748391 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.299010919182265 33.0 31.0 34.0 31.0 34.0 2 32.4899624855081 34.0 31.0 34.0 31.0 34.0 3 32.55757836776785 34.0 31.0 34.0 31.0 34.0 4 36.0159226397299 37.0 35.0 37.0 35.0 37.0 5 35.2059356288153 37.0 35.0 37.0 35.0 37.0 6 34.887931818454796 37.0 35.0 37.0 32.0 37.0 7 35.68145111705562 37.0 35.0 37.0 35.0 37.0 8 35.970753109573316 37.0 35.0 37.0 35.0 37.0 9 37.85803118410013 39.0 38.0 39.0 35.0 39.0 10 37.358502760538116 39.0 37.0 39.0 34.0 39.0 11 37.28466801762306 39.0 37.0 39.0 34.0 39.0 12 37.12395568268197 39.0 37.0 39.0 34.0 39.0 13 37.09030874672771 39.0 37.0 39.0 33.0 39.0 14 38.28514159590161 40.0 38.0 41.0 33.0 41.0 15 38.36986463554205 40.0 38.0 41.0 34.0 41.0 16 38.3511314116808 40.0 38.0 41.0 34.0 41.0 17 38.30160930821538 40.0 37.0 41.0 34.0 41.0 18 38.25168283295899 40.0 37.0 41.0 34.0 41.0 19 38.246144598090474 40.0 37.0 41.0 34.0 41.0 20 38.17462855848606 40.0 37.0 41.0 34.0 41.0 21 38.055042035791764 40.0 37.0 41.0 33.0 41.0 22 38.07532182446604 40.0 37.0 41.0 34.0 41.0 23 37.9960592338899 40.0 37.0 41.0 34.0 41.0 24 37.93710216993796 40.0 36.0 41.0 33.0 41.0 25 37.817002032154136 40.0 36.0 41.0 33.0 41.0 26 37.790178512701104 40.0 36.0 41.0 33.0 41.0 27 37.76113123437492 40.0 36.0 41.0 33.0 41.0 28 37.67037178754638 40.0 36.0 41.0 33.0 41.0 29 37.602400149623286 40.0 36.0 41.0 33.0 41.0 30 37.4934851529206 40.0 36.0 41.0 33.0 41.0 31 37.428960684423565 40.0 36.0 41.0 33.0 41.0 32 37.374372208504845 39.0 35.0 41.0 33.0 41.0 33 37.24608225505622 39.0 35.0 41.0 32.0 41.0 34 37.11370454320573 39.0 35.0 41.0 32.0 41.0 35 36.98232546381216 39.0 35.0 41.0 31.0 41.0 36 36.85740203421317 39.0 35.0 41.0 31.0 41.0 37 36.835909702120404 39.0 35.0 41.0 31.0 41.0 38 36.726447345016076 39.0 35.0 41.0 31.0 41.0 39 36.675402698824236 39.0 35.0 41.0 31.0 41.0 40 36.555093797668825 39.0 35.0 41.0 31.0 41.0 41 36.461810887839164 39.0 35.0 41.0 30.0 41.0 42 36.38366246451738 39.0 35.0 40.0 30.0 41.0 43 36.26012144880636 38.0 35.0 40.0 30.0 41.0 44 36.1733668269855 38.0 35.0 40.0 30.0 41.0 45 36.14975311586482 38.0 35.0 40.0 30.0 41.0 46 35.940245059600514 38.0 35.0 40.0 30.0 41.0 47 35.86098018120661 38.0 35.0 40.0 29.0 41.0 48 35.76000963171281 38.0 35.0 40.0 29.0 41.0 49 35.793220166427304 38.0 35.0 40.0 29.0 41.0 50 35.60561910922671 37.0 34.0 40.0 29.0 41.0 51 34.55121251482077 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 20.0 10 37.0 11 20.0 12 26.0 13 37.0 14 35.0 15 47.0 16 98.0 17 180.0 18 284.0 19 631.0 20 1171.0 21 1820.0 22 2826.0 23 4165.0 24 6169.0 25 9354.0 26 13055.0 27 15979.0 28 18600.0 29 22257.0 30 27295.0 31 35007.0 32 45475.0 33 64810.0 34 110131.0 35 139634.0 36 154924.0 37 230861.0 38 367668.0 39 475579.0 40 189.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.76602258876876 4.291031010797928 54.898646812984055 17.04429958744926 2 19.796315583871113 4.16171211130691 54.2848253050948 21.75714699972718 3 20.748390949164115 4.293719196678547 52.23694242306212 22.72094743109522 4 18.483737333353922 4.8007568101185605 51.67808573711486 25.03742011941265 5 17.495171274617636 7.779609938509179 50.487219392000995 24.2379993948722 6 21.861357099184335 7.791106222807141 52.74672541782702 17.600811260181505 7 85.06318094751116 2.061037834214429 8.996385819876675 3.8793953983977265 8 88.00920389089168 2.408786135366746 6.266447264942452 3.315562708799119 9 82.67389845863997 4.893356234389219 8.008048542917459 4.42469676405335 10 40.07518913103533 28.937463073191296 15.37476456925253 15.61258322652084 11 30.93575750504321 25.307439811804112 23.30108082231034 20.455721860842342 12 26.411426277074177 21.873539728813522 30.21080524894031 21.50422874517199 13 23.84764048773987 22.579045533865134 31.831209380510423 21.74210459788457 14 22.05301903292799 23.567211224491547 31.505996084399886 22.87377365818058 15 21.238727492877736 22.696353390059777 32.93519584578049 23.129723271281996 16 23.37955297184669 21.771045492684415 31.01062634159064 23.838775193878256 17 23.304398158077912 22.024650092570827 29.145368513107194 25.525583236244064 18 23.761732930448623 21.505773022167237 30.5323008411734 24.200193206210738 19 24.44584763934383 24.20768580940991 27.964168198074685 23.382298353171574 20 27.75408933127658 23.17530804036397 27.088849118989973 21.981753509369472 21 26.891753618040816 24.318301798625136 26.612754240899207 22.177190342434844 22 25.598621818574905 22.796159440308262 27.21816801848099 24.38705072263584 23 24.779068297651953 24.076365069369494 26.62447930697424 24.520087326004308 24 24.20837215474113 23.439493797440047 28.353097219100302 23.99903682871852 25 23.657294049214393 24.68418105561056 26.476285910874626 25.18223898430042 26 23.19052202853938 25.486289966031627 26.438594113101704 24.88459389232729 27 22.847349362928544 24.171652679520772 27.540979105932255 25.44001885161843 28 21.922270247330257 24.46535128583938 28.555797873587775 25.05658059324259 29 23.378466258405588 23.23559203862294 27.544696809809704 25.841244893161768 30 24.234624863660358 23.8591939674821 27.843943374222356 24.062237794635184 31 24.62984538355551 25.599422554794664 26.11160775821884 23.659124303430985 32 24.535186923291185 25.911023335169308 25.46100957966496 24.092780161874547 33 24.761566491705803 25.072766903970567 25.543771387521442 24.62189521680219 34 22.97907047107884 25.143288886753588 27.11664610490445 24.760994537263116 35 23.090944760067973 25.98892353026297 26.429442842018748 24.490688867650316 36 24.13956603528616 27.424815158622984 24.873154803473593 23.562464002617265 37 23.873264046772146 26.623850157087286 25.985949367161005 23.51693642897956 38 23.22621198576291 26.755800047014656 26.32517554711732 23.692812420105113 39 23.851358191617322 25.75636685386736 26.194541152408128 24.197733802107194 40 23.181427952900695 25.84610650592459 27.677790608622445 23.294674932552272 41 21.42472707763881 25.505278853528758 27.67596035440585 25.394033714426577 42 22.226664401727074 25.443965337272957 26.2432144754806 26.08615578551937 43 22.778314461696496 23.735423026085126 27.253171630373295 26.23309088184508 44 22.99880289935146 23.93943917579077 27.254773102812813 25.806984822044953 45 23.44910263207715 24.441157612913816 26.28971437167087 25.82002538333817 46 22.79810408541339 25.171657827110757 27.169094327298644 24.861143760177214 47 21.42564220474711 25.598736209463446 28.486476995134385 24.489144590655066 48 21.829041673172647 24.499554161511927 28.495399484440263 25.17600468087516 49 22.69795486249929 24.456142819312156 28.357615659197517 24.488286658991036 50 22.514128704620422 23.810120276299752 28.343888752573083 25.33186226650675 51 21.609983121624396 23.609135485140335 27.529025258080143 27.251856135155123 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 258.0 1 1201.5 2 2145.0 3 6267.5 4 10390.0 5 7061.5 6 3733.0 7 3566.5 8 3400.0 9 3423.5 10 3447.0 11 3476.5 12 3506.0 13 3557.0 14 3608.0 15 3484.0 16 3360.0 17 3366.5 18 3373.0 19 3521.5 20 3670.0 21 4056.0 22 4442.0 23 5212.0 24 5982.0 25 6867.5 26 10203.5 27 12654.0 28 14110.0 29 15566.0 30 19350.0 31 23134.0 32 27094.0 33 31054.0 34 35675.5 35 40297.0 36 44768.0 37 49239.0 38 52641.0 39 56043.0 40 63411.5 41 70780.0 42 77964.0 43 85148.0 44 94311.0 45 103474.0 46 116692.0 47 129910.0 48 141932.5 49 153955.0 50 154585.0 51 155215.0 52 144668.0 53 134121.0 54 125153.0 55 116185.0 56 110210.0 57 104235.0 58 99293.0 59 94351.0 60 89054.5 61 83758.0 62 75712.0 63 67666.0 64 59198.0 65 50730.0 66 43684.0 67 36638.0 68 30800.5 69 24963.0 70 21970.5 71 18978.0 72 15969.5 73 12961.0 74 10646.0 75 6812.5 76 5294.0 77 3849.0 78 2404.0 79 1828.5 80 1253.0 81 892.5 82 532.0 83 407.5 84 283.0 85 214.5 86 146.0 87 78.0 88 10.0 89 10.5 90 11.0 91 6.0 92 1.0 93 1.5 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1748391.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.33446604958162 #Duplication Level Percentage of deduplicated Percentage of total 1 77.55740191056894 23.526623751499105 2 9.069799563246688 5.502550538556338 3 2.8929457029045733 2.6326788962412544 4 1.311936978694335 1.5918763095757595 5 0.7850338864874484 1.1906791888712307 6 0.5590869463959159 1.0175762396526704 7 0.4416522203871124 0.9378098999538641 8 0.35354230309402473 0.8579613592237271 9 0.3186376556097458 0.8699132831590902 >10 6.098140476605393 47.32415465496591 >50 0.5543055965288808 10.214005771155989 >100 0.05376974424794065 2.8456870419230724 >500 0.0024355598988617523 0.49136820212702537 >1k 0.0011241045687054242 0.6820959012177376 >5k 1.8735076145090404E-4 0.31501896187718037 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5543 0.31703434758014654 No Hit TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 2666 0.15248305441974935 TruSeq Adapter, Index 23 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 2531 0.1447616694435055 TruSeq Adapter, Index 23 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT 2506 0.14333178333679367 TruSeq Adapter, Index 20 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC 1947 0.11135952999071717 TruSeq Adapter, Index 23 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.715863328054194E-4 0.0 0.0 0.1530550088624341 0.0 2 2.2878177707389251E-4 0.0 0.0 0.6036979142537339 0.0 3 2.2878177707389251E-4 0.0 0.0 0.9196455483927795 0.0 4 2.2878177707389251E-4 0.0 0.0 1.276316338850978 0.0 5 2.2878177707389251E-4 0.0 0.0 1.8938555506176822 0.0 6 2.2878177707389251E-4 0.0 0.0 2.469127329069985 0.0 7 2.2878177707389251E-4 0.0 0.0 2.9602646090033637 0.0 8 2.2878177707389251E-4 0.0 0.0 3.717532291117948 0.0 9 2.2878177707389251E-4 0.0 0.0 4.185162243456984 0.0 10 2.8597722134236564E-4 0.0 0.0 4.900620055811315 0.0 11 2.8597722134236564E-4 0.0 0.0 6.015759632713735 0.0 12 2.8597722134236564E-4 0.0 0.0 6.955823954710359 0.0 13 2.8597722134236564E-4 0.0 0.0 7.296194043552043 0.0 14 2.8597722134236564E-4 0.0 0.0 7.411500059197285 0.0 15 2.8597722134236564E-4 0.0 0.0 7.592580835751271 0.0 16 2.8597722134236564E-4 0.0 0.0 7.985513537875681 0.0 17 2.8597722134236564E-4 0.0 0.0 8.560098970996762 0.0 18 2.8597722134236564E-4 0.0 0.0 9.184272854298609 0.0 19 4.5756355414778503E-4 0.0 0.0 9.594192603370756 0.0 20 4.5756355414778503E-4 0.0 0.0 10.033568006241167 0.0 21 4.5756355414778503E-4 0.0 0.0 10.662889479527177 0.0 22 4.5756355414778503E-4 0.0 0.0 11.33179020024697 0.0 23 4.5756355414778503E-4 0.0 0.0 11.988050727783431 0.0 24 4.5756355414778503E-4 0.0 0.0 12.523457281580608 0.0 25 4.5756355414778503E-4 0.0 0.0 12.99200236102794 0.0 26 4.5756355414778503E-4 0.0 0.0 13.400492223993375 0.0 27 4.5756355414778503E-4 0.0 0.0 13.797257020883773 0.0 28 5.147589984162581E-4 0.0 0.0 14.214612177710821 0.0 29 5.147589984162581E-4 0.0 0.0 14.67051706397482 0.0 30 5.147589984162581E-4 0.0 0.0 15.185905212278032 0.0 31 5.147589984162581E-4 0.0 0.0 15.64375474364716 0.0 32 5.147589984162581E-4 0.0 0.0 16.09096592238235 0.0 33 5.147589984162581E-4 0.0 0.0 16.550474121635265 0.0 34 5.147589984162581E-4 0.0 0.0 17.010897447996474 0.0 35 5.147589984162581E-4 0.0 0.0 17.524741319304436 0.0 36 5.719544426847313E-4 0.0 0.0 17.98533623199845 0.0 37 5.719544426847313E-4 0.0 0.0 18.445530776582583 0.0 38 5.719544426847313E-4 0.0 0.0 18.908356311603068 0.0 39 5.719544426847313E-4 0.0 0.0 19.387253766462994 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATCG 20 7.0342957E-4 45.000004 9 TACGAAT 215 0.0 40.813953 12 TTTGGGA 9205 0.0 38.400326 4 CGTTTTT 3165 0.0 38.104267 1 TTACGGG 650 0.0 38.07692 3 TTGGGAC 3995 0.0 37.95995 5 TATGCGA 30 1.1401653E-4 37.499996 27 TCAAGCG 920 0.0 37.173916 17 TTTGGGC 5245 0.0 36.978073 4 TCGTTCA 320 0.0 36.562504 16 TTGGGAT 4320 0.0 36.510414 5 ACGACCA 865 0.0 36.416187 28 GGGCGAT 4855 0.0 36.194645 7 CGACCAA 865 0.0 36.15607 29 CATACGA 330 0.0 36.136364 18 ACATACG 330 0.0 36.136364 17 TCTTACG 125 0.0 36.000004 1 TATCTCG 25 0.0021074084 36.0 1 TCGGTAT 25 0.0021074084 36.0 5 TTGGGCA 2450 0.0 36.0 5 >>END_MODULE