SRR2933223.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933223.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	690775
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGC	4765	0.6898049292461366	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCG	4249	0.6151062212732077	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTC	3449	0.4992942709275814	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	3448	0.49914950598964936	No Hit
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	3084	0.44645506858238937	Illumina Single End Adapter 2 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	2993	0.4332814592305744	No Hit
TCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	2281	0.3302088234229669	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2034	0.29445188375375486	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGAAATGGT	1438	0.20817198074626325	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	990	0.14331728855271253	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTC	856	0.12391878686982014	No Hit
TCCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTG	838	0.12131301798704354	No Hit
GAACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	809	0.11711483478701458	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTA	806	0.11668053997321848	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTTG	30	2.164239E-6	45.000004	1
CAACGAA	30	2.164239E-6	45.000004	14
AACCCGA	30	2.164239E-6	45.000004	24
GTGCGTT	30	2.164239E-6	45.000004	21
TTCTCGT	30	2.164239E-6	45.000004	1
CTTCACG	35	1.2109922E-7	45.0	1
TAGGTCG	20	7.0313306E-4	45.0	32
CCGTACT	40	6.8084773E-9	45.0	44
CGAGGTA	20	7.0313306E-4	45.0	19
CGATGTA	20	7.0313306E-4	45.0	11
CGGTCGA	35	1.2109922E-7	45.0	41
AATCGCC	20	7.0313306E-4	45.0	42
CATATCG	25	3.889185E-5	44.999996	29
CGTTGAT	75	0.0	42.0	25
TTCACGG	65	0.0	41.53846	2
TTCTTCG	110	0.0	40.909092	1
TGTACGG	55	6.002665E-11	40.909092	2
CGAGACA	235	0.0	40.212765	22
CGTTTTT	1225	0.0	40.040813	1
TACGGGA	90	0.0	40.0	4