SRR2933221.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933221.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2511215
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10382	0.4134253737732532	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	9375	0.37332526287076173	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTT	6272	0.24975957853071123	No Hit
CTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGCT	4789	0.19070449961472832	No Hit
TCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	4310	0.1716300675171182	No Hit
GCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	3749	0.14929028378693182	No Hit
CCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATGCCGTCTTCTGC	3504	0.13953405025057591	No Hit
GCTCAACTTGACCTGTCTCTTATACACATCTGACGCCTATAGCGTCGTATG	2957	0.11775176557960987	No Hit
GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCCTA	2608	0.10385411046047431	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATTAG	3045	0.0	41.970444	16
ACTTGAC	3710	0.0	41.30054	6
CTTGACC	3975	0.0	40.867928	7
CATTAGA	3070	0.0	40.749187	17
CGTTTTT	5330	0.0	40.483116	1
CTCAACT	3885	0.0	39.96139	2
CCTGCAT	3320	0.0	39.713856	13
TCAACTT	3855	0.0	39.571983	3
TGCATTA	3210	0.0	39.532707	15
ATTAGAA	3185	0.0	39.34851	18
AACTTGA	3890	0.0	39.21594	5
TTGACCC	3715	0.0	38.822342	8
ACATACG	365	0.0	38.219177	17
TATGGGA	1410	0.0	37.97872	4
ACCCTGC	3505	0.0	37.93866	11
GACTGTA	2365	0.0	37.864693	31
CTGCATT	3385	0.0	37.7548	14
TGGGCGA	4285	0.0	37.75379	6
TCCCGTA	30	1.140307E-4	37.500004	33
TTTGGGA	12555	0.0	37.38351	4