SRR2933219.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933219.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2546158
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17961	0.7054157675996541	No Hit
CTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGCT	7273	0.2856460596710809	No Hit
CCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGC	6528	0.2563862886749369	No Hit
GCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGC	5036	0.1977881969618539	No Hit
TCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCTGC	4763	0.18706616007333401	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	8995	42.648693	1
CGTTGAT	325	38.76923	25
ACACGAC	2110	38.6019	26
AGACACG	2150	38.406975	24
ACGACCA	2095	38.12649	28
AACACGT	1830	38.114754	41
CGACCAA	2085	38.093525	29
AAACACG	1910	38.04974	40
TACGGGA	380	37.894737	4
GCGAGAC	2255	37.716187	21
CACGACC	2170	37.53456	27
CGAGACA	2255	37.51663	22
TCAAGCG	2300	37.467392	17
CGTTCAT	380	37.30263	17
GACACGA	2190	37.29452	25
TTTGGGC	6030	37.201492	4
TTTGGGA	12690	36.897163	4
TGGTCAA	2345	36.7484	14
AGGCACG	490	36.734695	10
GGAACAT	2680	36.604477	8