SRR2933218.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933218.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1053561
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	3497	0.3319219295323194	No Hit
GAATCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTC	2938	0.2788637772278966	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2936	0.27867394484040314	No Hit
CTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGCT	2794	0.2651958453283673	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGC	2786	0.2644365157783935	No Hit
CCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	2748	0.26082970041601766	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCG	2598	0.24659227135400796	No Hit
GCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTGC	2386	0.22647003827970094	No Hit
TCCTGTCTCTTATACACATCTGACGCACGCACATTCGTATGCCGTCTTCTG	1342	0.12737753200811344	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAT	30	2.1653286E-6	45.000004	45
GATAACG	30	2.1653286E-6	45.000004	17
GTTTACG	35	1.2117926E-7	45.0	1
TAAGTCG	20	7.0330186E-4	45.0	16
TCGGATA	20	7.0330186E-4	45.0	13
CATAGCG	25	3.890584E-5	45.0	10
AGCGAAC	20	7.0330186E-4	45.0	31
ACACGAC	1005	0.0	40.074627	26
CACGACC	1010	0.0	39.87624	27
TGGTCAA	1120	0.0	39.57589	14
AACACGT	900	0.0	39.5	41
GTCAAGC	1125	0.0	39.4	16
TTCGGGT	160	0.0	39.375	4
AGACACG	1030	0.0	39.32039	24
CGACCAA	1040	0.0	39.158657	29
ATGGTCA	1135	0.0	39.052864	13
GACACGA	1035	0.0	38.913044	25
CGAGACA	1090	0.0	38.807343	22
TCAAGCG	1145	0.0	38.711792	17
GCGAGAC	1105	0.0	38.687786	21