SRR2933217.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933217.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2561830
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	39748	1.5515471362268378	No Hit
CTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGCT	6095	0.2379158648309997	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCT	5677	0.2215994035513676	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTT	5470	0.21351924210427703	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTG	5243	0.20465838872993133	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC	4717	0.1841261910431215	No Hit
CCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	4459	0.1740552651815304	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	3825	0.14930733108754288	No Hit
TCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	3645	0.14228110374224676	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGT	3399	0.13267859303700869	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	3185	0.12432518941537885	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCT	3164	0.12350546289176095	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTC	2896	0.11304419106654226	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	2635	0.10285616141586287	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAC	20	7.034912E-4	45.0	9
CGTTTTT	46840	0.0	44.20741	1
CGTTATT	1320	0.0	42.954544	1
TACGGGA	210	0.0	42.857143	4
CTGCGCG	95	0.0	40.26316	1
GTCCGCG	45	1.9299478E-8	40.0	1
GTTTTTT	51975	0.0	39.896103	2
TTGTACG	85	0.0	39.705883	1
TAGTCCG	40	3.4604454E-7	39.375	1
ACGGGTA	155	0.0	39.193546	5
GCGATCG	150	0.0	39.000004	9
TACGGGT	280	0.0	38.571426	4
TTACGGG	650	0.0	37.730766	3
AGGGCGA	600	0.0	37.500004	6
CGACGGG	120	0.0	37.499996	3
TAGGGCG	395	0.0	37.025314	5
CGTTTCT	705	0.0	37.021275	1
CGTTTAT	630	0.0	36.785713	1
TTGCGCG	270	0.0	36.666664	1
TGGGCGA	3940	0.0	36.54822	6