SRR2933216.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933216.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	332478
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1124	0.338067481156648	No Hit
CTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGCT	1103	0.33175127376848995	No Hit
TCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	1005	0.3022756392904192	No Hit
GCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	757	0.22768423775407698	No Hit
CCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTGC	615	0.18497464493891325	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCATTCGTCGTATGCCGTCTTCTG	345	0.10376626423402449	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATGCG	20	7.0260465E-4	45.0	1
TACGGGA	95	0.0	45.0	4
GCGATGA	20	7.0260465E-4	45.0	9
TTACGGG	85	0.0	42.35294	3
ACGGGAC	60	3.6379788E-12	41.249996	5
TATGGGA	150	0.0	40.500004	4
TATCGGG	50	1.0768417E-9	40.500004	3
CGAATAT	45	1.9212166E-8	40.0	14
GCCGATT	80	0.0	39.375	9
CTACGGG	40	3.4483492E-7	39.375	3
TTTGGGC	960	0.0	38.67187	4
CGGGATA	35	6.234899E-6	38.57143	6
TGGGCGA	600	0.0	38.250004	6
TTTGGGA	1800	0.0	38.25	4
TTGGGAC	730	0.0	37.910957	5
GCGATCT	155	0.0	37.741936	9
TAACGGG	30	1.1381775E-4	37.499996	3
GGGCGAT	895	0.0	36.955307	7
GTGGCGT	55	2.737579E-9	36.81818	34
GGCGATG	325	0.0	36.692307	8