SRR2933211.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933211.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1724444
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGC	4842	0.2807861548417925	No Hit
GCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	4792	0.27788666955842	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4761	0.276088988682729	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTC	4534	0.26292532549621794	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCG	4387	0.25440083876310277	No Hit
CTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGCT	4047	0.23468433883616982	TruSeq Adapter, Index 13 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	3998	0.23184284325846477	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAGTTCACTCGTATGCCGTCTTCTGC	3559	0.20638536247045425	TruSeq Adapter, Index 19 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCTCG	35	1.2123928E-7	45.0	1
CTCGATT	20	7.034271E-4	45.0	16
CTTTACG	30	2.1661363E-6	44.999996	1
ACACGCG	290	0.0	41.12069	36
ATGCGAA	150	0.0	40.5	26
TAATGCG	150	0.0	40.5	24
TTTGGGC	4845	0.0	39.380806	4
CGAGATA	335	0.0	38.955223	19
GCTACGA	185	0.0	38.91892	10
CGAATAT	175	0.0	38.57143	14
TTACGGG	375	0.0	38.4	3
TTGGGAC	3420	0.0	38.223686	5
TACGAAA	255	0.0	37.941174	20
GGACGTA	30	1.1401591E-4	37.499996	8
TTTGGGA	9240	0.0	37.183437	4
TATGGGA	970	0.0	36.881443	4
TTGGGAT	4250	0.0	36.158825	5
CGTTTTT	3045	0.0	36.133003	1
CGTTTGG	1130	0.0	36.039825	2
GTCGACG	25	0.0021074	36.000004	37