SRR2933203.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933203.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1864663
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGC	10771	0.5776378895274911	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTC	9143	0.4903298880280244	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCG	8816	0.472793207137161	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGCT	5891	0.3159284010032912	Illumina Single End Adapter 2 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	5709	0.30616792417718375	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4948	0.2653562600856026	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	4652	0.2494820779947905	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCTGC	3716	0.19928534003195217	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTCAGTT	2453	0.13155192117825043	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCTTCT	2333	0.12511644195224553	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2213	0.11868096272624061	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2193	0.1176083828552398	No Hit
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG	2191	0.11750112486813973	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTC	2134	0.11444427223578736	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTCAGTTCGTATGCCGTCT	2110	0.1131571763905864	No Hit
TTTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCG	1927	0.10334307057092891	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGAA	25	3.891744E-5	45.0	15
TAGCGTC	25	3.891744E-5	45.0	22
TATACGA	20	7.034419E-4	45.0	39
CGATACG	20	7.034419E-4	45.0	45
TCGAACG	25	3.891744E-5	45.0	21
CGTTTTT	3100	0.0	39.774193	1
ACCGGTA	40	3.4597724E-7	39.375	41
CGATCGA	35	6.2503786E-6	38.57143	41
CACGTGA	695	0.0	38.52518	43
AACACGT	710	0.0	38.34507	41
AGACACG	800	0.0	38.25	24
CGATGAA	450	0.0	38.0	19
TTTGGGC	4810	0.0	37.889812	4
CTACGGG	210	0.0	37.5	3
TACGAAT	180	0.0	37.5	12
ACTCTCG	30	1.1401945E-4	37.499996	1
TTTGGGA	8485	0.0	37.230404	4
TATGGGA	855	0.0	37.105263	4
TCAAGCG	880	0.0	37.073864	17
CACGACC	820	0.0	37.042683	27