SRR2933202.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933202.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	507413
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4081	0.804275806887092	No Hit
CTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGCT	2096	0.41307573909221873	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1913	0.377010443169568	No Hit
GCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1600	0.3153249916734494	No Hit
CCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTGC	1421	0.28004800822998227	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCC	1017	0.2004284478324363	No Hit
TCCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCTG	771	0.15194723036264346	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	628	0.12376505923182891	No Hit
TTCCTGTCTCTTATACACATCTGACGCCAGTACGTTCGTATGCCGTCTTCT	579	0.11410823136182953	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAACG	20	7.0295564E-4	45.000004	17
GGTTCGC	20	7.0295564E-4	45.000004	11
TCGTTAG	25	3.8877148E-5	45.0	1
CGTTTTT	2110	0.0	42.8673	1
TAGGGCG	75	0.0	42.000004	5
CACCGCA	65	0.0	41.538464	34
CGTTCAT	115	0.0	41.086956	17
TGTACGG	50	1.0786607E-9	40.5	2
TCGTTTG	155	0.0	39.193546	1
GTACGGG	65	9.094947E-12	38.076927	3
TTTGGGC	1140	0.0	37.894737	4
TTACACG	535	0.0	37.850468	34
TCGTTCA	125	0.0	37.800003	16
CTTGGGA	1130	0.0	37.234516	4
ACACGCG	540	0.0	37.083332	36
AGGCACG	110	0.0	36.81818	10
TTGGGAA	1030	0.0	36.699028	5
TACGGGA	105	0.0	36.428574	4
TACACGC	550	0.0	36.409092	35
TTTTGCG	340	0.0	36.397057	1