##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933200.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 650869 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.971579534437804 33.0 31.0 34.0 30.0 34.0 2 32.14432704584179 33.0 31.0 34.0 30.0 34.0 3 32.239372285360034 34.0 31.0 34.0 30.0 34.0 4 35.79870603762048 37.0 35.0 37.0 35.0 37.0 5 35.0059689430592 37.0 35.0 37.0 33.0 37.0 6 34.69262017395206 37.0 35.0 37.0 32.0 37.0 7 35.543580966369575 37.0 35.0 37.0 33.0 37.0 8 35.77598257099355 37.0 35.0 37.0 35.0 37.0 9 37.62758404533017 39.0 37.0 39.0 35.0 39.0 10 37.07857648774177 39.0 37.0 39.0 33.0 39.0 11 36.97911254031149 39.0 37.0 39.0 33.0 39.0 12 36.811591887153945 39.0 35.0 39.0 33.0 39.0 13 36.66579449935394 39.0 35.0 39.0 33.0 39.0 14 37.68876532758512 39.0 36.0 41.0 33.0 41.0 15 37.82622770480696 40.0 36.0 41.0 33.0 41.0 16 37.887326021058 40.0 36.0 41.0 33.0 41.0 17 37.8307908350221 40.0 36.0 41.0 33.0 41.0 18 37.80048366107466 39.0 36.0 41.0 33.0 41.0 19 37.810010923857185 39.0 36.0 41.0 33.0 41.0 20 37.69562231416767 39.0 36.0 41.0 33.0 41.0 21 37.57750791633954 39.0 36.0 41.0 33.0 41.0 22 37.64929655583535 39.0 36.0 41.0 33.0 41.0 23 37.54286346407649 39.0 35.0 41.0 33.0 41.0 24 37.47083207219886 39.0 35.0 41.0 33.0 41.0 25 37.30486165418848 39.0 35.0 41.0 32.0 41.0 26 37.28246697876224 39.0 35.0 41.0 32.0 41.0 27 37.25076167400813 39.0 35.0 41.0 32.0 41.0 28 37.151396056656566 39.0 35.0 41.0 32.0 41.0 29 37.14309945626539 39.0 35.0 40.0 32.0 41.0 30 37.09334597284553 39.0 35.0 40.0 32.0 41.0 31 36.99219044077994 39.0 35.0 40.0 31.0 41.0 32 36.97809543855983 39.0 35.0 40.0 31.0 41.0 33 36.86475619517906 39.0 35.0 40.0 31.0 41.0 34 36.80950698220379 39.0 35.0 40.0 31.0 41.0 35 36.74784326800017 39.0 35.0 40.0 31.0 41.0 36 36.632803221539206 39.0 35.0 40.0 31.0 41.0 37 36.60752470927329 39.0 35.0 40.0 31.0 41.0 38 36.527828180478714 39.0 35.0 40.0 30.0 41.0 39 36.51541247163408 39.0 35.0 40.0 30.0 41.0 40 36.4262777916908 39.0 35.0 40.0 30.0 41.0 41 36.32076808082733 38.0 35.0 40.0 30.0 41.0 42 36.28478849046429 38.0 35.0 40.0 30.0 41.0 43 36.129818750009605 38.0 35.0 40.0 30.0 41.0 44 36.047024823735654 38.0 35.0 40.0 30.0 41.0 45 36.070453501395825 38.0 35.0 40.0 30.0 41.0 46 35.835802596221356 38.0 35.0 40.0 29.0 41.0 47 35.75138007801877 38.0 35.0 40.0 29.0 41.0 48 35.72510597370592 38.0 35.0 40.0 29.0 41.0 49 35.87980991566659 38.0 35.0 40.0 30.0 41.0 50 35.661043927426256 38.0 34.0 40.0 29.0 41.0 51 34.476845571074975 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 11.0 11 10.0 12 5.0 13 7.0 14 8.0 15 15.0 16 18.0 17 43.0 18 114.0 19 180.0 20 362.0 21 709.0 22 1100.0 23 1659.0 24 2404.0 25 3561.0 26 4983.0 27 6194.0 28 7542.0 29 9293.0 30 12201.0 31 15799.0 32 20737.0 33 28743.0 34 46439.0 35 61298.0 36 59088.0 37 86062.0 38 139289.0 39 142949.0 40 40.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.568172704491992 4.377378550829738 53.09762794049186 15.956820804186403 2 18.94835980819489 6.697046563901492 52.28840212085688 22.066191507046735 3 19.909382686838672 6.612083230265998 51.41280349809255 22.06573058480278 4 18.180156068271803 4.327291666986752 51.8168786652921 25.67567359944935 5 17.218518626636083 8.212251620525791 50.207645470901205 24.361584281936917 6 19.265627952783127 8.590054219819963 54.52571869300888 17.618599134388027 7 79.39232011357124 2.0045508389553044 13.045789552121857 5.5573394953515995 8 80.80320310231399 3.9708451316624394 8.837108542579228 6.388843223444349 9 74.17836768996526 5.606811816202646 11.57191385670542 8.642906637126673 10 38.241335814119275 25.030843380157915 20.145989438734986 16.581831366987824 11 28.669056292433652 24.48541872481252 26.728112723143983 20.117412259609846 12 24.768424982600184 21.436418081057788 32.93473801947858 20.860418916863456 13 22.043759957840976 25.594704925261457 34.364826101719395 17.99670901517817 14 18.157878159814032 29.033184865157196 31.75277974523291 21.056157229795858 15 15.42660658289149 24.907777141022233 38.81779590055756 20.847820375528716 16 16.60226558646978 23.82691447895045 34.458700598738 25.112119335841776 17 17.56712948381318 23.99791663145733 30.534101332218928 27.900852552510568 18 19.877579052005856 23.33818325961138 33.44175248782781 23.34248520055495 19 21.13051935182041 25.25147149426382 30.885170441363773 22.732838712551988 20 23.2590582743993 25.69564689668735 30.18518319354586 20.860111635367485 21 21.7569126813537 27.73323049645935 29.45047313668342 21.059383685503537 22 20.182402296007336 24.58313424053074 28.479156327924667 26.755307135537258 23 18.85556079641218 27.183964822414342 27.66163390789852 26.29884047327496 24 21.228695789782584 23.5477492398624 30.081936610900193 25.14161835945482 25 18.809468572016797 26.455707676967254 28.400492264956544 26.33433148605941 26 17.04874560011308 27.323777903080344 28.766618167403884 26.860858329402692 27 19.253797615188308 25.610683563051857 31.00961944723132 24.125899374528515 28 16.32801685131724 23.68786960202437 33.628425996629126 26.355687550029266 29 16.91492450861848 22.217374003063597 33.04320838755571 27.82449310076221 30 18.78872707103887 23.436820619817507 33.725066027111446 24.049386282032177 31 19.992809612994318 24.40014810968106 28.017926802474847 27.58911547484978 32 19.400370888765636 25.45965470778298 29.69952478916648 25.440449614284905 33 18.700690922443684 22.504682201794832 30.203005520312075 28.59162135544941 34 16.892032037168768 21.779805152803405 30.51750813143659 30.810654678591238 35 16.298978749948144 20.83768008616173 32.52390265936771 30.339438504522416 36 19.39453254034222 21.223164722855138 30.70264523275805 28.67965750404459 37 16.755599052958427 23.271349534238073 33.85827255561411 26.114778857189386 38 16.405451788301487 24.781945368422832 31.555965947064617 27.256636896211067 39 18.73295547952046 22.020252923399333 32.71195893490088 26.53483266217933 40 19.779402614043686 20.339423140447614 33.06563993676147 26.815534308747228 41 16.523294242005687 20.9418485132953 30.014181041038977 32.52067620366003 42 18.530610614424713 20.59738595631379 30.73721440105459 30.134789028206903 43 19.706884180994948 20.85289052021221 29.923379358980075 29.516845939812775 44 18.612808414596486 21.721114387073282 30.625671218017757 29.04040598031247 45 18.636161808290147 21.59528261447388 29.735476724194882 30.03307885304109 46 21.3224166460532 21.68946439298845 31.259285662706322 25.72883329825203 47 16.513307593386685 21.961715798417192 34.449328513110935 27.075648095085185 48 17.07302083829465 20.360932845165465 33.74642209108131 28.81962422545858 49 18.473763537670408 18.57731740181204 34.968941522794914 27.979977537722643 50 19.37624929133205 19.062975806191414 32.0165809095225 29.54419399295404 51 17.53363580075253 19.06543405815917 29.587367043137714 33.81356309795059 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 120.0 1 317.5 2 515.0 3 1629.0 4 2743.0 5 1880.0 6 1017.0 7 1033.5 8 1050.0 9 1075.5 10 1101.0 11 1203.0 12 1305.0 13 1262.0 14 1219.0 15 1319.5 16 1420.0 17 1347.5 18 1275.0 19 1405.0 20 1535.0 21 1677.5 22 1820.0 23 2183.0 24 2546.0 25 2618.5 26 3565.0 27 4439.0 28 5117.0 29 5795.0 30 7143.5 31 8492.0 32 9352.5 33 10213.0 34 12055.5 35 13898.0 36 15145.0 37 16392.0 38 19382.5 39 22373.0 40 26814.5 41 31256.0 42 37113.0 43 42970.0 44 48634.0 45 54298.0 46 68518.5 47 82739.0 48 85905.5 49 89072.0 50 83521.0 51 77970.0 52 63207.5 53 48445.0 54 40940.0 55 33435.0 56 28424.0 57 23413.0 58 21216.5 59 19020.0 60 17115.5 61 15211.0 62 13003.5 63 10796.0 64 8879.5 65 6963.0 66 5837.0 67 4711.0 68 3948.0 69 3185.0 70 2552.0 71 1919.0 72 1787.0 73 1655.0 74 1352.0 75 727.5 76 406.0 77 322.0 78 238.0 79 154.0 80 70.0 81 63.5 82 57.0 83 38.5 84 20.0 85 12.5 86 5.0 87 3.5 88 2.0 89 3.5 90 5.0 91 2.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 650869.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.790439348877044 #Duplication Level Percentage of deduplicated Percentage of total 1 72.33278905549871 23.71823932459448 2 11.992553867160227 7.864822204385165 3 4.801147507136079 4.722952084132734 4 2.400981945371581 3.1491701142982254 5 1.444155442837492 2.3677245729356726 6 0.8888558724170449 1.7487584744630584 7 0.6383714252850363 1.4652735652005624 8 0.4692683941890718 1.2310013454401347 9 0.3939807137004032 1.1626920627498327 >10 4.066537433993986 32.718887266966014 >50 0.4785417627069301 9.76794119729397 >100 0.0848875251558818 5.176696837810557 >500 0.0037313197870717275 0.8956138230388387 >1k 0.004197734760455693 4.010227126690811 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGCT 3962 0.6087246435150545 TruSeq Adapter, Index 10 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 3958 0.608110080523116 RNA PCR Primer, Index 35 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 3716 0.5709290195108385 RNA PCR Primer, Index 10 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTGC 3584 0.5506484407768691 RNA PCR Primer, Index 35 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGC 2860 0.439412539236006 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCG 2716 0.41728827152622106 No Hit GAATCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTC 2531 0.38886473314906683 RNA PCR Primer, Index 10 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1538 0.2362994704003417 No Hit TCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 1356 0.2083368542671413 TruSeq Adapter, Index 10 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 911 0.13996672141398653 RNA PCR Primer, Index 35 (95% over 22bp) TGCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCTG 857 0.1316701210228172 TruSeq Adapter, Index 10 (95% over 23bp) TTCCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCTTCT 832 0.12782910232320174 RNA PCR Primer, Index 35 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCTTCTCT 719 0.11046769780093998 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTCT 678 0.10416842713357065 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTCTTCTCTCGTATGCCGTC 662 0.10171017516581679 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.536407479846175E-4 0.0 0.0 0.6520513344467166 0.0 2 1.536407479846175E-4 0.0 0.0 2.5857737885811125 0.0 3 3.07281495969235E-4 0.0 0.0 3.61885417802968 0.0 4 3.07281495969235E-4 0.0 0.0 4.8283141461645895 0.0 5 3.07281495969235E-4 0.0 0.0 7.032597957499896 0.0 6 3.07281495969235E-4 0.0 0.0 8.177528811481265 0.0 7 3.07281495969235E-4 0.0 0.0 9.343662088684512 0.0 8 3.07281495969235E-4 0.0 0.0 11.222995718032355 0.0 9 3.07281495969235E-4 0.0 0.0 12.241172954926414 0.0 10 3.07281495969235E-4 0.0 0.0 14.337908242672489 0.0 11 3.07281495969235E-4 0.0 0.0 17.013408228076617 0.0 12 3.07281495969235E-4 0.0 0.0 19.829489497886673 0.0 13 3.07281495969235E-4 0.0 0.0 20.59077940415045 0.0 14 3.07281495969235E-4 0.0 0.0 20.841060182617394 0.0 15 3.07281495969235E-4 0.0 0.0 21.29122757421232 0.0 16 3.07281495969235E-4 0.0 0.0 22.256552393799673 0.0 17 3.07281495969235E-4 0.0 0.0 23.741029300827048 0.0 18 3.07281495969235E-4 0.0 0.0 25.377917829855164 0.0 19 3.07281495969235E-4 0.0 0.0 26.481365681880686 0.0 20 3.07281495969235E-4 0.0 0.0 27.450838801663622 0.0 21 3.07281495969235E-4 0.0 0.0 28.73973103650658 0.0 22 3.07281495969235E-4 0.0 0.0 30.046906520359705 0.0 23 3.07281495969235E-4 0.0 0.0 31.357615741416474 0.0 24 3.07281495969235E-4 0.0 0.0 32.25241945767889 0.0 25 3.07281495969235E-4 0.0 0.0 33.01908679012213 0.0 26 3.07281495969235E-4 0.0 0.0 33.708165544833136 0.0 27 3.07281495969235E-4 0.0 0.0 34.38956226214491 0.0 28 3.07281495969235E-4 0.0 0.0 35.09569513988222 0.0 29 3.07281495969235E-4 0.0 0.0 35.90031173707766 0.0 30 3.07281495969235E-4 0.0 0.0 36.807867635422795 0.0 31 3.07281495969235E-4 0.0 0.0 37.601422098763344 0.0 32 3.07281495969235E-4 0.0 0.0 38.30863046173654 0.0 33 3.07281495969235E-4 0.0 0.0 38.97343397826598 0.0 34 3.07281495969235E-4 0.0 0.0 39.69216539733802 0.0 35 3.07281495969235E-4 0.0 0.0 40.44638782919451 0.0 36 3.07281495969235E-4 0.0 0.0 41.142687699060794 0.0 37 3.07281495969235E-4 0.0 0.0 41.865106496084465 0.0 38 3.07281495969235E-4 0.0 0.0 42.574619470277426 0.0 39 3.07281495969235E-4 0.0 0.0 43.33529481354927 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACGC 25 3.888934E-5 45.000004 40 CACTAAC 25 3.888934E-5 45.000004 26 TACAACG 25 3.888934E-5 45.000004 39 CAGCGTT 20 7.03103E-4 45.0 29 TCGCATA 20 7.03103E-4 45.0 43 TCGCAAT 20 7.03103E-4 45.0 31 TAGGTTA 20 7.03103E-4 45.0 38 CCGGATA 20 7.03103E-4 45.0 5 TTATCCG 20 7.03103E-4 45.0 1 TCTAGCG 40 6.8066583E-9 45.0 1 CGGATCA 20 7.03103E-4 45.0 17 AACGATT 20 7.03103E-4 45.0 28 AGACACG 40 6.8066583E-9 45.0 24 GCGATAT 20 7.03103E-4 45.0 9 CGTGTTA 20 7.03103E-4 45.0 43 CGTAAGT 20 7.03103E-4 45.0 36 CGGTCAT 20 7.03103E-4 45.0 27 CGACTCG 20 7.03103E-4 45.0 16 TATCGCA 20 7.03103E-4 45.0 29 CAATAGG 40 6.8066583E-9 45.0 13 >>END_MODULE